Gm18486 (predicted gene, 18486) - Rat Genome Database

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Gene: Gm18486 (predicted gene, 18486) Mus musculus
Analyze
Symbol: Gm18486
Name: predicted gene, 18486
RGD ID: 5143074
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: Crb1  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39976,776,472 - 76,777,045 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl976,776,468 - 76,776,765 (-)EnsemblGRCm39 Ensembl
GRCm38976,869,190 - 76,869,763 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl976,869,186 - 76,869,483 (-)EnsemblGRCm38mm10GRCm38
MGSCv37976,716,997 - 76,717,570 (-)NCBIGRCm37MGSCv37mm9NCBIm37
Celera974,042,200 - 74,042,773 (-)NCBICelera
Cytogenetic Map9DNCBI
cM Map942.67NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Gm18486
15 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:47
Count of miRNA genes:47
Interacting mature miRNAs:47
Transcripts:ENSMUST00000184040
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300848Skull13_mskull morphology 13 (mouse)Not determined95936994693370128Mouse
1300563Pgia5_mproteoglycan induced arthritis 5 (mouse)Not determined94883105682831177Mouse
1300716Cd4ts4_mCD4 T cell subset 4 (mouse)Not determined94883105682831177Mouse
1301407Rapop2_mradiation-induced apoptosis 2 (mouse)Not determined976417989110418183Mouse
1301241Renf1_mrenal failure 1 (mouse)Not determined95203447899792481Mouse
1301172Fembrs6_mfemur breaking strength 6 (mouse)Not determined95902438793024534Mouse
1301290Smgd1_msubmucosal gland distribution 1 (mouse)Not determined96583105686577967Mouse
1301302Pas4_mpulmonary adenoma susceptibility 4 (mouse)Not determined969121898103121973Mouse
1301621Hpic1_mhaloperidol-induced catalepsy 1 (mouse)Not determined969428566103428698Mouse
1301636Lith5_mlithogenic gene 5 (mouse)Not determined966089077100089175Mouse
1301725Lifespan1_mlife span 1 (mouse)Not determined974250230108250378Mouse
1301456Adip5_madiposity 5 (mouse)Not determined95936994693370128Mouse
1301869Tbbmd4_mtotal body bone mineral density 4 (mouse)Not determined976024387101406120Mouse
1301184Bdln4_mbody length 4 (mouse)Not determined95015132084151448Mouse
1301558Stheal8_msoft tissue heal 8 (mouse)Not determined94348071477480860Mouse
1301573Etohcta8_methanol conditioned taste aversion 8 (mouse)Not determined972859058106859205Mouse
1301611Lrnx3_mlearning contextual 3 (mouse)Not determined96214976796149881Mouse
1302065El1_mepilepsy 1 (mouse)Not determined975682646114303447Mouse
1301435Trigq1_mtriglyceride QTL 1 (mouse)Not determined94442817478428262Mouse
1301803Stheal9_msoft tissue heal 9 (mouse)Not determined95902438793024534Mouse
1301914Ksc1_mkeratinocyte stem cell locus 1 (mouse)Not determined97540903779998332Mouse
1301924Bmd10_mbone mineral density 10 (mouse)Not determined968779563102779705Mouse
1357610Vtbt8_mvertebral trabecular bone trait 8 (mouse)Not determined968779563102779705Mouse
1357635Splq4_mspleen weight QTL 4 (mouse)Not determined963239711120191934Mouse
4141545Tailaq2_mtail length adjusted QTL 2 (mouse)Not determined63239711120191934Mouse
4141224Dxmod_mdoxorubicin nephropathy modifier (mouse)Not determined49452421101406120Mouse
4141833W10q13_mweight 10 weeks QTL 13 (mouse)Not determined63239711120191934Mouse
4142042Alpq3_malcohol preference QTL 3 (mouse)Not determined93730619798701707Mouse
4141676Neogq1_mneonatal growth QTL 1 (mouse)Not determined95780504786121973Mouse
5491195Mobq8_mmultigenic obesity QTL 8 (mouse)Not determined95936994693370128Mouse
11081165Psl6_mpromotion susceptibility QTL 6 (mouse)96504119195522808Mouse
10043877Adip21_madiposity 21 (mouse)Not determined95643910890439255Mouse
10054068El8_mepilepsy 8 (mouse)Not determined972859058106859205Mouse
10054492El7_mepilepsy 7 (mouse)Not determined975682646114303447Mouse
10045638Heal29_mwound healing/regeneration 29 (mouse)Not determined967006220101006220Mouse
10045639Heal28_mwound healing/regeneration 28 (mouse)Not determined94348071477480860Mouse
10412174Habiir4_mhyperoxic acute lung injury imprinted region 4 (mouse)Not determined96926774798701707Mouse
13207569Tcq13_mtotal cholesterol QTL 13 (mouse)959897283109089068Mouse
12790990Tgl7_mtriglyceride 7 (mouse)95455996088559960Mouse
14746993Manh66_mmandible shape 66 (mouse)94981404883814048Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NG_020899 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC117570 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000184040
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl976,776,468 - 76,776,765 (-)Ensembl
GRCm38.p6 Ensembl976,869,186 - 76,869,483 (-)Ensembl

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000098888 Ensembl
MGD MGI:5010671 ENTREZGENE
NCBI Gene 100417258 ENTREZGENE
PhenoGen Gm18486 PhenoGen