Gm17435 (predicted gene, 17435) - Rat Genome Database
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Gene: Gm17435 (predicted gene, 17435) Mus musculus
Analyze
Symbol: Gm17435
Name: predicted gene, 17435
RGD ID: 5140447
MGI Page MGI
Description:
Type: ncrna
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
NCBI Annotation Information: Genome Annotation Status: not in current annotation release
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm38872,492,934 - 72,505,499 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl872,492,934 - 72,505,499 (+)EnsemblGRCm38mm10GRCm38
MGSCv37875,016,833 - 75,029,398 (+)NCBIGRCm37mm9NCBIm37
Celera876,837,511 - 76,850,031 (+)NCBICelera
cM Map835.08NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:12520002   PMID:14610273   PMID:18799693  


Genomics

Position Markers
AW495270  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38872,495,100 - 72,495,245UniSTSGRCm38
MGSCv37875,018,999 - 75,019,144UniSTSGRCm37
Celera876,839,637 - 76,839,782UniSTS
Cytogenetic Map8B3.3UniSTS
AI414941  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38872,494,883 - 72,494,988UniSTSGRCm38
MGSCv37875,018,782 - 75,018,887UniSTSGRCm37
Celera876,839,420 - 76,839,525UniSTS
Cytogenetic Map8B3.3UniSTS
Whitehead/MRC_RH8772.55UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4140967Bmd39_mbone mineral density 39 (mouse)Not determined832016544117238700Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined834642776114837007Mouse
1301013Capsq4_mcapsaicin sensitivity related QTL 4 (mouse)Not determined83616300092728652Mouse
27226754Femd6_mfemur midshaft diameter 6, 10 week (mouse)837400000109600000Mouse
12904744Carcdq1_mcardiac collagen deposition QTL 1 (mouse)83970925694689598Mouse
1301544Iba3_minduction of brown adipocytes 3 (mouse)Not determined84429488078295025Mouse
1301717Adip4_madiposity 4 (mouse)Not determined84763703081637146Mouse
10766453Char11_mP. chabaudi malaria resistance QTL 11 (mouse)84763703081637146Mouse
1301441Skull11_mskull morphology 11 (mouse)Not determined84773713481737254Mouse
1357715Alaa3_malopecia areata 3 (mouse)Not determined84879293982793021Mouse
14746987Manh64_mmandible shape 64 (mouse)85005330684053306Mouse
14747005Mancz7_mmandible centroid size 7 (mouse)85005330684053306Mouse
14700686Civq3_mcerebral infarct volume QTL 3 (mouse)85188219185882191Mouse
1301506Aevm1_mautoimmune extremity vasculitis in MRL mice 1 (mouse)Not determined85428781788287993Mouse
1301952Im3_mimmunoregulatory 3 (mouse)Not determined85470661488706763Mouse
10412287Carg3_mCandida albicans resistance gene 3 (mouse)Not determined85554502889545028Mouse
11353828Gf7_mgonadal fat pad weight 7 (mouse)85820147992201479Mouse
10043975Obq31_mobesity QTL 31 (mouse)Not determined85840977692409776Mouse
1301688Orch6_mautoimmune orchitis resistance 6 (mouse)Not determined86078685094786976Mouse
4141285Tgq18_mtriglyceride QTL 18 (mouse)Not determined6346010797460107Mouse
4141797Skmw16_mskeletal muscle weight 16 (mouse)Not determined86393954797939696Mouse
1357787Vtbt5_mvertebral trabecular bone trait 5 (mouse)Not determined86535776899357920Mouse
10043992Hbnr11_mHeligmosomoides bakeri nematode resistance 11 (mouse)Not determined86560020799600347Mouse
10766466Char12_mP. chabaudi malaria resistance QTL 12 (mouse)86826982782600347Mouse
1301767Fcsa2_mfemoral cross-sectional area 2 (mouse)Not determined870305375104305495Mouse
4142283Imraq2_mimmune response to AAV2 QTL 2 (mouse)Not determined870305375104305495Mouse
1558780Idd22_minsulin dependent diabetes susceptibility 22 (mouse)Not determined871102903105103009Mouse
4141395Char2a_mP. chabaudi malaria resistance QTL 2a (mouse)Not determined7113678390202598Mouse
4142023W3q5_mweight 3 weeks QTL 5 (mouse)Not determined71287817123895615Mouse
1357708Orq1_movulation rate QTL 1 (mouse)Not determined871287817123895615Mouse
1301872Cd4ts3_mCD4 T cell subset 3 (mouse)Not determined871396181105396393Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:43
Count of miRNA genes:42
Interacting mature miRNAs:43
Transcripts:ENSMUST00000181452
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENSMUST00000181452
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl872,492,934 - 72,505,499 (+)Ensembl
RefSeq Acc Id: ENSMUST00000212699
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl872,492,944 - 72,494,941 (+)Ensembl
RefSeq Acc Id: XR_105224
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38872,492,934 - 72,505,499 (+)ENTREZGENE
MGSCv37875,016,833 - 75,029,398 (+)ENTREZGENE
cM Map8 ENTREZGENE
RefSeq Acc Id: XR_108059
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
Celera876,837,511 - 76,850,031 (+)ENTREZGENE
Promoters
RGD ID:15093470
Promoter ID:EPDNEWNC_M1369
Type:single initiation site
Name:Gm17435_1
Description:predicted gene, 17435 [Source:MGI Symbol;Acc:MGI:4937069]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38872,492,944 - 72,493,004EPDNEWNC

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000097000 Ensembl
MGD MGI:4937069 ENTREZGENE
NCBI Gene 100503374 ENTREZGENE
PhenoGen Gm17435 PhenoGen