Gm19680 (predicted gene, 19680) - Rat Genome Database

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Gene: Gm19680 (predicted gene, 19680) Mus musculus
Analyze
Symbol: Gm19680
Name: predicted gene, 19680
RGD ID: 5140394
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: Paox  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39131,654,385 - 31,655,924 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl131,654,230 - 31,655,742 (+)EnsemblGRCm39 Ensembl
GRCm38131,615,304 - 31,616,843 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl131,615,149 - 31,616,661 (+)EnsemblGRCm38mm10GRCm38
MGSCv37131,639,913 - 31,673,507 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera131,378,074 - 31,411,596 (+)NCBICelera
Cytogenetic Map1BNCBI
cM Map111.73NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Gm19680
94 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:29
Count of miRNA genes:28
Interacting mature miRNAs:28
Transcripts:ENSMUST00000095050
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301275Sle10_msystematic lupus erythematosus susceptibility 10 (mouse)Not determined1288219436882352Mouse
1301370Adip1_madiposity 1 (mouse)Not determined1288219436882352Mouse
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
15092044Wtgrme1_mweek ten growth rate, maternal effect 1 (mouse)1328014237782236Mouse
15092046Wngrme1_mweek nine growth rate, maternal effect 1 (mouse)1328014237782236Mouse
15092048Wsigrme1_mweek six growth rate, maternal effect 1 (mouse)1328014237782236Mouse
15092050Wsegrme1_mweek seven growth rate, maternal effect 1 (mouse)1328014237782236Mouse
15092051Wegrme1_mweek eight growth rate, maternal effect 1 (mouse)1328014237782236Mouse
15092055Lgrme1_mlate growth rate, maternal effect 1 (mouse)1328014237782236Mouse
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
1301471Obq2_mobesity QTL 2 (mouse)Not determined1394162037941887Mouse
10043970Obq23_mobesity QTL 23 (mouse)Not determined1501266539012665Mouse
1301011Cplaq4_mcircadian period of locomotor activity 4 (mouse)Not determined1967344243673601Mouse
14700685Civq2_mcerebral infarct volume QTL 2 (mouse)11134048245340482Mouse
1301073Orch5_mautoimmune orchitis resistance 5 (mouse)Not determined11906535153065454Mouse
1301756Pgia1_mproteoglycan induced arthritis 1 (mouse)Not determined11906535153065454Mouse
1301240Sluc15_msusceptibility to lung cancer 15 (mouse)Not determined11906535153065454Mouse
12880407V125Dq2_mvitamin D active form serum level QTL 2 (mouse)11933908153339081Mouse
1357475w3q13_mweight 3 weeks QTL 13 (mouse)Not determined12310959173976915Mouse
4142433Hbnr1_mHeligmosomoides bakeri nematode resistance 1 (mouse)Not determined2555019158273271Mouse
11100001Col4a1m1_mcollagen, type IV, alpha 1 modifier 1 (mouse)12555019162946882Mouse
12880409V125Dq1_mvitamin D active form serum level QTL 1 (mouse)12603916060039160Mouse

Markers in Region
AI118225  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387140,132,443 - 140,134,034UniSTSGRCm38
GRCm38131,616,423 - 31,616,543UniSTSGRCm38
MGSCv377147,318,342 - 147,319,933UniSTSGRCm37
MGSCv37131,673,268 - 31,673,388UniSTSGRCm37
Celera131,411,357 - 31,411,477UniSTS
Celera7139,930,506 - 139,932,205UniSTS
Cytogenetic Map1BUniSTS
Cytogenetic Map7F4UniSTS
Whitehead/MRC_RH1541.41UniSTS
UniSTS:224824  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387140,126,643 - 140,127,531UniSTSGRCm38
GRCm38131,615,622 - 31,615,818UniSTSGRCm38
MGSCv377147,312,542 - 147,313,430UniSTSGRCm37
MGSCv37131,672,467 - 31,672,663UniSTSGRCm37
Celera131,410,556 - 31,410,752UniSTS
Celera7139,924,706 - 139,925,594UniSTS
Cytogenetic Map1BUniSTS
Cytogenetic Map7F4UniSTS
Pao-pending  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387140,126,430 - 140,127,692UniSTSGRCm38
GRCm38131,615,409 - 31,615,979UniSTSGRCm38
MGSCv37131,672,254 - 31,672,824UniSTSGRCm37
MGSCv377147,312,329 - 147,313,591UniSTSGRCm37
Celera7139,924,493 - 139,925,755UniSTS
Celera131,410,343 - 31,410,913UniSTS
Cytogenetic Map7F4UniSTS
cM Map7 UniSTS
cM Map1 UniSTS
Paox  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38131,616,186 - 31,616,535UniSTSGRCm38
Celera131,411,120 - 31,411,469UniSTS
Cytogenetic Map7F4UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000095050
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl131,654,230 - 31,655,742 (+)Ensembl
GRCm38.p6 Ensembl131,615,149 - 31,616,661 (+)Ensembl
RefSeq Acc Id: XM_003084452
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv37131,639,913 - 31,673,507 (+)ENTREZGENE
RefSeq Acc Id: XM_003086153
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
Celera131,378,074 - 31,411,596 (+)ENTREZGENE

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000070960 Ensembl, ENTREZGENE
MGD MGI:5011865 ENTREZGENE
NCBI Gene 100503415 ENTREZGENE
PhenoGen Gm19680 PhenoGen