Gm20121 (predicted gene, 20121) - Rat Genome Database

Name: Gm20121
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Gm20121 (predicted gene, 20121) Mus musculus

Analyze

Symbol:

Gm20121

Name:

predicted gene, 20121

RGD ID:

5138225

MGI Page

MGI

Description:

Type:

pseudo (Ensembl: processed_pseudogene)

RefSeq Status:

INFERRED

Previously known as:

Arhgap11b

Related Functional Gene:

Arhgap11a

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	87,107,982 - 87,109,573 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	87,107,980 - 87,109,573 (-)	Ensembl		GRCm39 Ensembl
GRCm38	5	86,960,123 - 86,961,714 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	86,960,121 - 86,961,714 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	87,389,504 - 87,390,739 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
Celera	5	84,180,129 - 84,182,558 (-)	NCBI		Celera
Cytogenetic Map	5	E1	NCBI
cM Map	5	43.56	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

References

Genomics

Variants

Variants in Gm20121
42 total Variants

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
11040589	Lmr3a_m	leishmaniasis resistance 3a (mouse)					5	59602801	93602980	Mouse
11040590	Lmr3b_m	leishmaniasis resistance 3b (mouse)					5	59602801	93602980	Mouse
10043993	Hbnr10_m	Heligmosomoides bakeri nematode resistance 10 (mouse)			Not determined		5	72418876	106419011	Mouse
13464248	Ahl13_m	age related hearing loss, early onset 13 (mouse)					5	55645874	89645995	Mouse
10755524	Mono1_m	monocyte differential 1 (mouse)					5	80849259	114849259	Mouse
1301843	Listr1_m	listeriosis resistance 1 (mouse)			Not determined		5	60246081	94246203	Mouse
13464249	Ahl16_m	age related hearing loss, early onset 16 (mouse)					5	76445064	110445225	Mouse
1301010	ahl2_m	age related hearing loss 2 (mouse)			Not determined		5	62650568	96650688	Mouse
13506928	Recrq8_m	recombination rate in male meiosis QTL 8 (mouse)					5	74460661	132528839	Mouse
11040591	Lmr3c_m	leishmaniasis resistance 3c (mouse)					5	59602801	93602980	Mouse
1300986	Hdlq2_m	HDL QTL 2 (mouse)			Not determined		5	76280786	110280917	Mouse
10401246	Bglu13_m	blood glucose level 13 (mouse)			Not determined		5	79539640	113539786	Mouse
10401245	Bglu18_m	blood glucose level 18 (mouse)			Not determined		5	82838468	116838597	Mouse
1301243	Bmd2_m	bone mineral density 2 (mouse)			Not determined		5	55388334	100455525	Mouse
10043962	Obq27_m	obesity QTL 27 (mouse)			Not determined		5	56285655	90285655	Mouse
25314315	Mlh1fc4_m	MLH1 foci count 4 (mouse)					5	74460661	132528839	Mouse
11341716	Rvfs3_m	Rift Valley fever susceptibility 3 (mouse)					5	26441234	138455402	Mouse
4142064	Tmc1m4_m	Tmc1 modifier 4 (mouse)			Not determined		5	54500177	127001072	Mouse
10045972	Tir5_m	trypanosome infection response 5 (mouse)			Not determined		5	63705442	104387065	Mouse
4140990	Lgq6_m	late growth QTL 6 (mouse)			Not determined			32133234	100777931	Mouse
4141438	Skmw13_m	skeletal muscle weight 13 (mouse)			Not determined		5	76190263	110190479	Mouse
1301713	Dbsty2_m	diabesity 2 (mouse)			Not determined		5	76445064	110445225	Mouse
12910784	Pwgrq15_m	post-weaning growth rate QTL 15 (mouse)					5	77175823	97658215	Mouse
12738408	Lfibq5_m	liver fibrosis QTL 5 (mouse)					5	84783853	89966041	Mouse
1301693	Sle6_m	systemic lupus erythematosus susceptibility 6 (mouse)			Not determined		5	8890693	87841837	Mouse
11041899	Lmr24a_m	leishmaniasis resistance 24a (mouse)					5	52694462	107321041	Mouse
4142317	Rgcs1_m	retinal ganglion cell susceptible 1 (mouse)			Not determined			55388334	108762627	Mouse
1301419	Cypr3_m	cytokine production 3 (mouse)			Not determined		5	81019649	115019803	Mouse
13464247	Ahl14_m	age related hearing loss, early onset 14 (mouse)					5	60403062	94403160	Mouse
11252124	Modvl6_m	modifier of vacuolated lens 6 (mouse)					5	62650568	96650688	Mouse
4142428	Modvl1_m	modifier of vacuolated lens 1 (mouse)			Not determined			62650568	96650688	Mouse
13464250	Ahl15_m	age related hearing loss, early onset 15 (mouse)					5	62650568	96650688	Mouse
11049560	Lmr24d_m	leishmaniasis resistance 24d (mouse)					5	64374877	98374996	Mouse
1357431	Cia27_m	collagen induced arthritis 27 (mouse)			Not determined		5	75315348	120018629	Mouse
1301691	Cdcs10_m	cytokine deficiency colitis susceptibility 10 (mouse)			Not determined		5	76280786	110280917	Mouse
1300931	Cocrb6_m	cocaine related behavior 6 (mouse)			Not determined		5	76445064	110445225	Mouse
27226719	Tibw6_m	tibia width 6, proximal, 16 week (mouse)					5	72857343	139985755	Mouse
4141124	Dshv2_m	dorsal hippocampal volume 2 (mouse)			Not determined		5	75315348	98019803	Mouse
11041665	Lmr24_m	leishmaniasis resistance 24 (mouse)					5	52694462	107321041	Mouse
13464242	Ahl17_m	age related hearing loss, early onset 17 (mouse)					5	82838468	116838597	Mouse
10044005	Ahl7_m	age related hearing loss 7 (mouse)			Not determined		5	58330502	92330641	Mouse
11040592	Lmr3d_m	leishmaniasis resistance 3d (mouse)					5	59602801	93602980	Mouse
1301829	Thyls2_m	thymic lymphoma susceptibility 2 (mouse)			Not determined		5	76445064	110445225	Mouse
12910816	Ogrq2_m	overall growth rate QTL 2 (mouse)					5	77175823	97658215	Mouse
4141219	W10q16_m	weight 10 weeks QTL 16 (mouse)			Not determined			32133234	100777931	Mouse
12904739	M2fscn2_m	modifier 2 of FSCN2 (mouse)					5	66529661	100529661	Mouse
12904740	M1fscn2_m	modifier 1 of Fscn2 (mouse)					5	66529661	100529661	Mouse
26884395	Humsd2_m	humerus midshaft diameter 2, 10 week (mouse)					5	70057343	132528839	Mouse
1301524	Lmb2_m	lupus in MRL and B6 F2 cross (mouse)			Not determined		5	37581488	112465722	Mouse
4141505	Chlq14_m	circulating hormone level QTL 14 (mouse)			Not determined		5	76280786	110280917	Mouse

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NG_067250	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_030255004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC160532	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSMUST00000198547

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	87,107,980 - 87,109,573 (-)	Ensembl
GRCm38.p6 Ensembl	5	86,960,121 - 86,961,714 (-)	Ensembl

RefSeq Acc Id:

XM_030255004 ⟹ XP_030110864

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	5	86,960,851 - 86,961,822 (-)	NCBI

Sequence:

show sequence

GGAGCAGAGAGCAATCAAGCCTGAGAGTGTTTGGAAATTGGAAGAGTTGGTTGGTGGCAAAGAA
AGTCAGGACCTGGAGTCAGCCACAGAGAGTGGGCAACATGTCAGATGTGGGTTGAGAGACTGGT
CAGATTGGCCCTGCTGCAGCAGCTTCGGGCTCTGTGTGGCATTAAGGTCAAGGGTAGCTGCCAT
TAGTGTGATTGCAGGAGACATGAAACTGCAGCTACAGAAATAAGAGGGAAGATACTTGGAATTC
CCTTTAATTCCTTGCCTCTTTCAGTTGTTCCAGAGTATAGATATATTCCTACACCAAGCTTTCT
TGTTGATGCATGCACGTCTTTAAAAGACCATATGCATACAGAAAGGCTTTTTGGGAATTCGGGA
CCTGTTATTAGTCTAAAGGTACTAAATAGTAAACTGAACCATGGTGAAGCCTGCCTGCCTTCTA
CACTTCCATGTAATGTTGAACACCTGCTAAAGCAGTTCTTCCAGGAATTGCCAGAACCTGTCCT
CCATGCTGATCTGCATGAAGCACTTTTCAAAGCTCAACAGTTAGAAACAGAGGAGAGAAATAAA
GCTAGATTGTTGCTGTCATGTCTTNATGCAGATCCTACTCTTGATGGATTAAGATACTTTTCTT
AGACAAGTGATGGCCATGAGAAGATGTCTGCAAACACAGAAAAGAAGCTATGTCTGCATATTGT
ATCCTGGGAAAGATACCAGCCATGTTAGGTATCCATGGACTCTGTCCTACTCCATTACTGAAAG
ACTTTGAAGGAGACTTTGAAATTCTTGGTGAACTTAAGAGAAAAAGAAGACAAAGTGTTGGAGA
TTTTGTGAATGGAGCCCTAAATAAACAAATCTAGCAGAATACCCTCTATTACACCTCAATAAAA
TAGAACTGCCCAGGCCTTTG

hide sequence

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSMUSG00000104798	Ensembl, ENTREZGENE
MGD	MGI:5012306	ENTREZGENE
NCBI Gene	Gm20121	ENTREZGENE
PhenoGen	Gm20121	PhenoGen

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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