Gm13187 (predicted gene 13187) - Rat Genome Database

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Gene: Gm13187 (predicted gene 13187) Mus musculus
Analyze
Symbol: Gm13187
Name: predicted gene 13187
RGD ID: 5137938
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
NCBI Annotation Information: Genome Annotation Status: not in current annotation release
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39 Ensembl24,292,406 - 4,305,978 (-)EnsemblGRCm39 Ensembl
GRCm3824,287,595 - 4,301,167 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl24,287,595 - 4,301,167 (-)EnsemblGRCm38mm10GRCm38
MGSCv3724,208,641 - 4,222,213 (-)NCBIGRCm37MGSCv37mm9NCBIm37
Celera24,235,443 - 4,249,087 (-)NCBICelera
cM Map22.49NCBI


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:381
Count of miRNA genes:315
Interacting mature miRNAs:358
Transcripts:ENSMUST00000132211, ENSMUST00000133873, ENSMUST00000156609
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_104650 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_107349 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000132211
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl24,292,406 - 4,305,923 (-)Ensembl
GRCm38.p6 Ensembl24,287,595 - 4,301,112 (-)Ensembl
RefSeq Acc Id: ENSMUST00000133873
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl24,295,970 - 4,305,978 (-)Ensembl
GRCm38.p6 Ensembl24,291,159 - 4,301,167 (-)Ensembl
RefSeq Acc Id: ENSMUST00000156609
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl24,305,322 - 4,305,978 (-)Ensembl
GRCm38.p6 Ensembl24,300,511 - 4,301,167 (-)Ensembl
RefSeq Acc Id: XR_104650
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3824,287,595 - 4,301,167 (-)ENTREZGENE
MGSCv3724,208,641 - 4,222,213 (-)ENTREZGENE
cM Map2 ENTREZGENE
RefSeq Acc Id: XR_107349
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
Celera24,235,443 - 4,249,087 (-)ENTREZGENE

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000087355 Ensembl
MGD MGI:3649588 ENTREZGENE
NCBI Gene 100504349 ENTREZGENE
PhenoGen Gm13187 PhenoGen