Gm14827 (predicted gene 14827) - Rat Genome Database

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Gene: Gm14827 (predicted gene 14827) Mus musculus
Analyze
Symbol: Gm14827
Name: predicted gene 14827
RGD ID: 5136320
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X93,486,338 - 93,491,333 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX93,486,338 - 93,491,333 (+)EnsemblGRCm39 Ensembl
GRCm38X94,442,732 - 94,447,727 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX94,442,732 - 94,447,727 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X91,688,071 - 91,693,066 (+)NCBIGRCm37MGSCv37mm9NCBIm37
CeleraX81,369,990 - 81,374,981 (+)NCBICelera
Cytogenetic MapXC3NCBI
cM MapX41.56NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073   PMID:24316575  


Genomics

Variants

.
Variants in Gm14827
127 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:92
Count of miRNA genes:88
Interacting mature miRNAs:91
Transcripts:ENSMUST00000146644
Prediction methods:Miranda, Pita, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357433Dbts2_mdiabetes 2 (mouse)Not determinedX7226295150107038Mouse
4141630Gct6_mgranulosa cell tumorigenesis 6 (mouse)Not determined47179121129764756Mouse
13824980Ferq1_mgenetic fertility QTL 1 (mouse)X54045360148782996Mouse
25314318Sccor2_msynaptonemal complex length to mean MLH1 count ratio 2 (mouse)X7054360696543606Mouse
4141665Mhysq2_mmale hybrid sterility QTL 2 (mouse)Not determined71453852139203212Mouse
12879918Shm4_msperm head morphology 4 (mouse)X72072050102062720Mouse
1357500Mdmsc6_mmodifier of muscularity 6 (mouse)Not determinedX75306671109306758Mouse
1302054Gct4_mgranulosa cell tumorigenesis 4 (mouse)Not determinedX76124336102062720Mouse
11075102Modc2_mmodifier of Odc2 (mouse)X80189914114190059Mouse
4141803Lmr30_mleishmaniasis resistance 30 (mouse)Not determined85062606119062720Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000146644
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX93,486,338 - 93,491,333 (+)Ensembl
GRCm38.p6 EnsemblX94,442,732 - 94,447,727 (+)Ensembl
RefSeq Acc Id: NR_045323
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X93,486,338 - 93,491,333 (+)NCBI
GRCm38X94,442,732 - 94,447,727 (+)ENTREZGENE
CeleraX81,369,990 - 81,374,981 (+)NCBI
cM MapX ENTREZGENE
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000084904 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000146644 ENTREZGENE
MGD MGI:3705192 ENTREZGENE
NCBI Gene 100503393 ENTREZGENE
PhenoGen Gm14827 PhenoGen
RNAcentral URS000075D0C3 RNACentral