Gene: Gm19990 (predicted gene, 19990) Mus musculus |
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Analyze |
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Symbol: |
Gm19990 |
Name: |
predicted gene, 19990 |
RGD ID: |
5136045 |
MGI Page |
MGI |
Description: |
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Type: |
ncrna (Ensembl: lncRNA)
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RefSeq Status: |
VALIDATED |
Latest Assembly: |
GRCm39 - Mouse Genome Assembly GRCm39 |
Position: |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | 12 | 56,300,028 - 56,313,166 (+) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 12 | 56,300,028 - 56,313,169 (+) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 12 | 56,253,243 - 56,266,381 (+) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 12 | 56,253,243 - 56,266,384 (+) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 12 | 57,354,230 - 57,367,371 (+) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | Celera | 12 | 57,401,940 - 57,415,109 (+) | NCBI | | Celera | | | Cytogenetic Map | 12 | C1 | NCBI | | | | | cM Map | 12 | 24.27 | NCBI | | | | |
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JBrowse: |
View Region in Genome Browser (JBrowse)
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Model |
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References
Additional References at PubMed
Genomics
QTLs in Region (GRCm39)
4142234 | Tmc1m3_m | Tmc1 modifier 3 (mouse) | | | Not determined | | 12 | 5418440 | 77031203 | Mouse | 27226753 | Femd7_m | femur midshaft diameter 7, 10 week (mouse) | | | | | 12 | 9550000 | 84146774 | Mouse | 13207568 | Tcq14_m | total cholesterol QTL 14 (mouse) | | | | | 12 | 11660001 | 97176774 | Mouse | 1558978 | Cplaq10_m | circadian period of locomotor activity 10 (mouse) | | | Not determined | | 12 | 15341026 | 79040364 | Mouse | 1301574 | Lmblgq5_m | limb length QTL 5 (mouse) | | | Not determined | | 12 | 17596447 | 80956883 | Mouse | 1301989 | Hdlq18_m | HDL QTL 18 (mouse) | | | Not determined | | 12 | 29160685 | 63160884 | Mouse | 1300636 | Gct2_m | granulosa cell tumorigenesis 2 (mouse) | | | Not determined | | 12 | 29160685 | 63160884 | Mouse | 4141843 | Moen3_m | modifier of engrailed QTL 3 (mouse) | | | Not determined | | 12 | 29801584 | 63801733 | Mouse | 14747008 | Mancz10_m | mandible centroid size 10 (mouse) | | | | | 12 | 29863522 | 63863522 | Mouse | 10402492 | Dipa8_m | drug induced psychomotor activation 8 (mouse) | | | Not determined | | 12 | 34933872 | 68934019 | Mouse | 1300818 | Bbaa10_m | B.burgdorferi-associated arthritis 10 (mouse) | | | Not determined | | 12 | 35091004 | 65511019 | Mouse | 4142002 | Tbqt3_m | tibia bone quality traits 3 (mouse) | | | Not determined | | 12 | 35285496 | 109936243 | Mouse | 1357479 | Splwt1_m | spleen weight 1 (mouse) | | | Not determined | | 12 | 41693175 | 90887526 | Mouse | 1357757 | Lnopy2_m | lens opacity 2 (mouse) | | | Not determined | | 12 | 52846626 | 86846796 | Mouse | 1357749 | Vtbt13_m | vertebral trabecular bone trait 13 (mouse) | | | Not determined | | 12 | 53132002 | 87132145 | Mouse | 12904004 | Opfaq11_m | open field activity QTL 11 (mouse) | | | | | 12 | 53155624 | 57276756 | Mouse | 12832727 | Ahrq1_m | airway hyperresponsiveness QTL 1 (mouse) | | | | | 12 | 54695910 | 82665939 | Mouse | 12903999 | Opfaq8_m | open field activity QTL 8 (mouse) | | | | | 12 | 54907653 | 57870585 | Mouse | |
Markers in Region
UniSTS:224544 |
Mouse Assembly | Chr | Position (strand) | Source | JBrowse |
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GRCm38 | 12 | 56,253,891 - 56,254,046 | UniSTS | GRCm38 | MGSCv37 | 12 | 57,354,878 - 57,355,033 | UniSTS | GRCm37 | Celera | 12 | 57,402,588 - 57,402,743 | UniSTS | | Cytogenetic Map | 12 | C1 | UniSTS | |
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Expression
Sequence
RefSeq Acc Id: |
ENSMUST00000219468 |
Type: |
CODING |
Position: |
Mouse Assembly | Chr | Position (strand) | Source |
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GRCm39 Ensembl | 12 | 56,300,028 - 56,313,169 (+) | Ensembl | GRCm38.p6 Ensembl | 12 | 56,253,243 - 56,266,384 (+) | Ensembl |
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RefSeq Acc Id: |
NR_045048 |
RefSeq Status: |
VALIDATED |
Type: |
NON-CODING |
Position: |
Mouse Assembly | Chr | Position (strand) | Source |
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GRCm39 | 12 | 56,300,028 - 56,313,166 (+) | NCBI | GRCm38 | 12 | 56,253,243 - 56,266,381 (+) | ENTREZGENE | Celera | 12 | 57,401,940 - 57,415,106 (+) | ENTREZGENE | cM Map | 12 | | ENTREZGENE |
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Sequence: |
CCTTCCCGTGCTCACAGATACCAAGCTTCTGGGACAGTGTTTCCTTTGTGTGAAGGCTTTGCCA GGCTGGAATTTATGGTATTAAGCAGGTGACTGAGAACTGGCGACCAGGTTCCAGAAAAAGGCTC CGTAGGTGCAATGTGCCTCCCTCCCTGAAGAACGCAGGGGAGTTGCGCCCGGATTTGTATTTAT TCAAAATACAAATGAAAATCAAGAGGTCTTCTATGAGATCTTTGTGCAAAGAGAAAGATGAGCA TTGCCTCCTGGTAGTGTAAGAGCAGGAACTGTTTGGCCAGTGCCTACTATGCGCTCTGAGCACT GAGATCCATGAGGGAAGTGTGAGGAGAGAGTCCAGCTGCCTCCAGCCGATCAAGCAGGCCAAAT AATGTTCCTGATGAAGCGAGCTGCGCCACCCAAGAAAAGCATCTTTGTAGCTGATTCCCCAAAA TTCAGATAGTATTTGTTCTCTTCCTTTACTTCTCTCCCTAAGGGAAAAAAGAGAGTTTATATCC CCTAAAAAACACCTCAAATAATTGTCCTCTGCCTGAGCAGTTCTCTGAGCCCTGGACTACACAG AAGTTCTTGGCATCTTTTGGACATCCTGTGGAGACCTCAGACAACAATCATAAACAGAACTCTT TGCTTCTTGTCTAATATCTGGCCATCTTTGAGTGTTCTCTTTCCAAAAAACATCAAAGATGGAA ATGAAGGAGTTACTATCCTCCCCCCCACACACAACACACACCATTAGCTTTACACAATCACAAA GTTGTGTCAATATTACCTTATCTCTCCCAATCTGATTTTCTCCATCACTATTGCCAGTGACTTG GTCTAATGAGTACATGCAGTCTGGTTACAGCTACGAGTTCACCTCACCATTGTATGTTCTGTTA ATGAGAAACAAGTCATGAGCCTTACTCTACCCAAGGGACAGATTGCACAAGCACAAAGCCCAAG GGCCAAACTCAGGAGTCCATTGTAGAATTCATCCTACCATTGACCTCAAATTTAGCTTACTTAT ACAGAGAAACATTCCCCAAACTCAAGAATTGGTTCTAATTCCAATATACAGGTCCACACAATGC TTCTTGCCATCATTTATTATATTTTTAAATAGTTATATGACAATCTCATTAATATACCTTAAAG GGTAGCATTAGGTCTGGGATATTGCAGTGGTTTGAAACTATTTTTTTTAAATAAACTGATAGAA ACACC
hide sequence
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Promoters
RGD ID: | 15094112 |
Promoter ID: | EPDNEWNC_M2020 |
Type: | initiation region |
Name: | Gm19990_1 |
Description: | predicted gene, 19990 [Source:MGI Symbol;Acc:MGI:5012175] |
SO ACC ID: | SO:0000170 |
Source: | EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/) |
Experiment Methods: | Single-end sequencing. |
Position: | Mouse Assembly | Chr | Position (strand) | Source |
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GRCm38 | 12 | 56,253,197 - 56,253,257 | EPDNEWNC |
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Additional Information
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