Gm19990 (predicted gene, 19990) - Rat Genome Database

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Gene: Gm19990 (predicted gene, 19990) Mus musculus
Analyze
Symbol: Gm19990
Name: predicted gene, 19990
RGD ID: 5136045
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391256,300,028 - 56,313,166 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1256,300,028 - 56,313,169 (+)EnsemblGRCm39 Ensembl
GRCm381256,253,243 - 56,266,381 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1256,253,243 - 56,266,384 (+)EnsemblGRCm38mm10GRCm38
MGSCv371257,354,230 - 57,367,371 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera1257,401,940 - 57,415,109 (+)NCBICelera
Cytogenetic Map12C1NCBI
cM Map1224.27NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073  


Genomics

Variants

.
Variants in Gm19990
374 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142234Tmc1m3_mTmc1 modifier 3 (mouse)Not determined12541844077031203Mouse
27226753Femd7_mfemur midshaft diameter 7, 10 week (mouse)12955000084146774Mouse
13207568Tcq14_mtotal cholesterol QTL 14 (mouse)121166000197176774Mouse
1558978Cplaq10_mcircadian period of locomotor activity 10 (mouse)Not determined121534102679040364Mouse
1301574Lmblgq5_mlimb length QTL 5 (mouse)Not determined121759644780956883Mouse
1301989Hdlq18_mHDL QTL 18 (mouse)Not determined122916068563160884Mouse
1300636Gct2_mgranulosa cell tumorigenesis 2 (mouse)Not determined122916068563160884Mouse
4141843Moen3_mmodifier of engrailed QTL 3 (mouse)Not determined122980158463801733Mouse
14747008Mancz10_mmandible centroid size 10 (mouse)122986352263863522Mouse
10402492Dipa8_mdrug induced psychomotor activation 8 (mouse)Not determined123493387268934019Mouse
1300818Bbaa10_mB.burgdorferi-associated arthritis 10 (mouse)Not determined123509100465511019Mouse
4142002Tbqt3_mtibia bone quality traits 3 (mouse)Not determined1235285496109936243Mouse
1357479Splwt1_mspleen weight 1 (mouse)Not determined124169317590887526Mouse
1357757Lnopy2_mlens opacity 2 (mouse)Not determined125284662686846796Mouse
1357749Vtbt13_mvertebral trabecular bone trait 13 (mouse)Not determined125313200287132145Mouse
12904004Opfaq11_mopen field activity QTL 11 (mouse)125315562457276756Mouse
12832727Ahrq1_mairway hyperresponsiveness QTL 1 (mouse)125469591082665939Mouse
12903999Opfaq8_mopen field activity QTL 8 (mouse)125490765357870585Mouse

Markers in Region
UniSTS:224544  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381256,253,891 - 56,254,046UniSTSGRCm38
MGSCv371257,354,878 - 57,355,033UniSTSGRCm37
Celera1257,402,588 - 57,402,743UniSTS
Cytogenetic Map12C1UniSTS


Expression


Sequence


RefSeq Acc Id: ENSMUST00000219468
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1256,300,028 - 56,313,169 (+)Ensembl
GRCm38.p6 Ensembl1256,253,243 - 56,266,384 (+)Ensembl
RefSeq Acc Id: NR_045048
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391256,300,028 - 56,313,166 (+)NCBI
GRCm381256,253,243 - 56,266,381 (+)ENTREZGENE
Celera1257,401,940 - 57,415,106 (+)ENTREZGENE
cM Map12 ENTREZGENE
Sequence:
Promoters
RGD ID:15094112
Promoter ID:EPDNEWNC_M2020
Type:initiation region
Name:Gm19990_1
Description:predicted gene, 19990 [Source:MGI Symbol;Acc:MGI:5012175]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381256,253,197 - 56,253,257EPDNEWNC

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000112164 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000219468 ENTREZGENE
MGD MGI:5012175 ENTREZGENE
NCBI Gene 100503961 ENTREZGENE
PhenoGen Gm19990 PhenoGen
RNAcentral URS000075C5D7 RNACentral