Gm20063 (predicted gene, 20063) - Rat Genome Database

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Gene: Gm20063 (predicted gene, 20063) Mus musculus
Analyze
Symbol: Gm20063
Name: predicted gene, 20063
RGD ID: 5136030
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391261,546,446 - 61,568,606 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1261,535,887 - 61,568,613 (-)EnsemblGRCm39 Ensembl
GRCm381261,499,660 - 61,521,820 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1261,499,660 - 61,521,820 (-)EnsemblGRCm38mm10GRCm38
MGSCv371262,600,631 - 62,622,807 (-)NCBIGRCm37MGSCv37mm9NCBIm37
Celera1262,687,511 - 62,709,688 (-)NCBICelera
Cytogenetic Map12C1NCBI
cM Map1226.43NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073  


Genomics

Variants

.
Variants in Gm20063
822 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142234Tmc1m3_mTmc1 modifier 3 (mouse)Not determined12541844077031203Mouse
27226753Femd7_mfemur midshaft diameter 7, 10 week (mouse)12955000084146774Mouse
13207568Tcq14_mtotal cholesterol QTL 14 (mouse)121166000197176774Mouse
1558978Cplaq10_mcircadian period of locomotor activity 10 (mouse)Not determined121534102679040364Mouse
1301574Lmblgq5_mlimb length QTL 5 (mouse)Not determined121759644780956883Mouse
1301989Hdlq18_mHDL QTL 18 (mouse)Not determined122916068563160884Mouse
1300636Gct2_mgranulosa cell tumorigenesis 2 (mouse)Not determined122916068563160884Mouse
4141843Moen3_mmodifier of engrailed QTL 3 (mouse)Not determined122980158463801733Mouse
14747008Mancz10_mmandible centroid size 10 (mouse)122986352263863522Mouse
10402492Dipa8_mdrug induced psychomotor activation 8 (mouse)Not determined123493387268934019Mouse
1300818Bbaa10_mB.burgdorferi-associated arthritis 10 (mouse)Not determined123509100465511019Mouse
4142002Tbqt3_mtibia bone quality traits 3 (mouse)Not determined1235285496109936243Mouse
1357479Splwt1_mspleen weight 1 (mouse)Not determined124169317590887526Mouse
1357757Lnopy2_mlens opacity 2 (mouse)Not determined125284662686846796Mouse
1357749Vtbt13_mvertebral trabecular bone trait 13 (mouse)Not determined125313200287132145Mouse
12832727Ahrq1_mairway hyperresponsiveness QTL 1 (mouse)125469591082665939Mouse
13504832Bacszq2_mbaculum size QTL 2 (mouse)125694579875345787Mouse
27226728Tibl20_mtibia length 20, 16 week (mouse)125914678693866774Mouse
27226776Tibl6_mtibia length 6, 5 week (mouse)126064678692666774Mouse
10043948Pbft6_mpercent body fat 6 (mouse)Not determined126120542795205427Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000220757
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1261,546,446 - 61,568,606 (-)Ensembl
GRCm38.p6 Ensembl1261,499,660 - 61,521,820 (-)Ensembl
RefSeq Acc Id: ENSMUST00000242201
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1261,562,320 - 61,568,613 (-)Ensembl
RefSeq Acc Id: ENSMUST00000244322
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1261,535,887 - 61,568,578 (-)Ensembl
RefSeq Acc Id: NR_045049
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391261,546,446 - 61,568,606 (-)NCBI
GRCm381261,499,660 - 61,521,820 (-)ENTREZGENE
Celera1262,687,522 - 62,709,688 (-)ENTREZGENE
cM Map12 ENTREZGENE
Sequence:
Promoters
RGD ID:15094133
Promoter ID:EPDNEWNC_M2028
Type:multiple initiation site
Name:Gm20063_1
Description:predicted gene, 20063 [Source:MGI Symbol;Acc:MGI:5012248]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381261,521,813 - 61,521,873EPDNEWNC

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000113429 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000220757 ENTREZGENE
MGD MGI:5012248 ENTREZGENE
NCBI Gene 100504101 ENTREZGENE
PhenoGen Gm20063 PhenoGen
RNAcentral URS000075D0A7 RNACentral