Ighv5-8 (immunoglobulin heavy variable V5-8) - Rat Genome Database

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Gene: Ighv5-8 (immunoglobulin heavy variable V5-8) Mus musculus
Analyze
Symbol: Ighv5-8
Name: immunoglobulin heavy variable V5-8
RGD ID: 5135697
MGI Page MGI
Description:
Type: pseudo (Ensembl: IG_V_pseudogene)
RefSeq Status: VALIDATED
Previously known as: Gm17309
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912113,618,587 - 113,618,865 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl12113,618,584 - 113,619,044 (-)EnsemblGRCm39 Ensembl
GRCm39 Ensembl12113,618,587 - 113,618,864 (+)EnsemblGRCm39 Ensembl
GRCm3812113,654,967 - 113,655,245 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12113,654,964 - 113,655,424 (-)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl12113,654,967 - 113,655,244 (+)EnsemblGRCm38mm10GRCm38
MGSCv3712114,893,178 - 114,893,456 (-)NCBIGRCm37MGSCv37mm9NCBIm37
Cytogenetic Map12F1NCBI
cM Map1262.15NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:73
Count of miRNA genes:72
Interacting mature miRNAs:73
Transcripts:ENSMUST00000166255
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13524849Ppiq11a_mprepulse inhibition QTL 11a (mouse)1280989143114989143Mouse
13524846Ppiq11_mprepulse inhibition QTL 11 (mouse)1282666396116666396Mouse
1301492Dbsty3_mdiabesity 3 (mouse)Not determined1283532075117532224Mouse
1301879Insq10_minsulin QTL 10 (mouse)Not determined1283532075117532224Mouse
1300883Ath21_matherosclerosis 21 (mouse)Not determined1285961579119961683Mouse
10412156Nociq3_mnociceptive sensitivity inflammatory QTL 3 (mouse)Not determined1286396075114831653Mouse
4142007Chlq17_mcirculating hormone level QTL 17 (mouse)Not determined1288052874120092757Mouse
1300545Lifespan3_mlife span 3 (mouse)Not determined1288052874120092757Mouse
1301308Prdt4_mprion disease incubation time 4 (mouse)Not determined1288308354120092757Mouse
5491194Mobq3_mmultigenic obesity QTL 3 (mouse)Not determined1289664071120092757Mouse
1301836Heal5_mwound healing/regeneration 5 (mouse)Not determined1289939031120092757Mouse
1301922Bbaa6_mB.burgdorferi-associated arthritis 6 (mouse)Not determined1290308268120092757Mouse
10402491Dipa4_mdrug induced psychomotor activation 4 (mouse)Not determined1291222515120092757Mouse
12910532Nrq10a_mnoise-induced hearing loss resistant QTL 10a (mouse)1292750025120092757Mouse
12910533Nrq10_mnoise-induced hearing loss resistant QTL 10 (mouse)1292750025120092757Mouse
1357463Vtbt14_mvertebral trabecular bone trait 14 (mouse)Not determined1292936097120092757Mouse
1300973Abmm_mantibody mediated myocarditis (mouse)Not determined1293264461120092757Mouse
1302177Dps2_mdelta power in slow-wave sleep 2 (mouse)Not determined1294146064120092757Mouse
1302138Im6_mimmunoregulatory 6 (mouse)Not determined1296860337120092757Mouse
1301269Sluc12_msusceptibility to lung cancer 12 (mouse)Not determined1296860337120092757Mouse
10412075Nils1_mneointima lesion size 1 (mouse)Not determined12102024665120092757Mouse
4141297Plyid_mPolymeric IgA dominance (mouse)Not determined109183385115885122Mouse
1558957Igan4_mIgA nephropathy 4 (mouse)Not determined12109750025119024949Mouse
15092085Igly2_mIgG glycosylation 2, GP14 (mouse)12111737297119992757Mouse
15092083Igly5_mIgG glycosylation 5, GP20 (mouse)12113373605117830647Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000166255   ⟹   ENSMUSP00000128354
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl12113,618,587 - 113,618,864 (+)Ensembl
GRCm38.p6 Ensembl12113,654,967 - 113,655,244 (+)Ensembl
RefSeq Acc Id: ENSMUST00000191967
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl12113,618,584 - 113,619,044 (-)Ensembl
GRCm38.p6 Ensembl12113,654,964 - 113,655,424 (-)Ensembl
Protein Sequences
Ensembl Protein ENSMUSP00000128354.2
Reference Protein Sequences
RefSeq Acc Id: ENSMUSP00000128354   ⟸   ENSMUST00000166255

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A075B676-F1-model_v2 AlphaFold A0A075B676 1-92 view protein structure


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000090395 Ensembl, UniProtKB/TrEMBL
  ENSMUSG00000103262 Ensembl
Ensembl Transcript ENSMUST00000166255.2 UniProtKB/TrEMBL
MGD MGI:5009890 ENTREZGENE
NCBI Gene 777782 ENTREZGENE
PhenoGen Ighv5-8 PhenoGen
UniProt A0A075B676_MOUSE UniProtKB/TrEMBL