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References
References - curated
Genomics
miRNA Target Status
Predicted Targets
Summary Value | Count of predictions: | 83875 | Count of gene targets: | 22408 | Count of transcripts: | 57820 | Interacting mature miRNAs: | hsa-miR-4722-3p, hsa-miR-4722-5p | Prediction methods: | Microtar, Miranda, Pita, Pita,Microtar, Rnahybrid, Rnahybrid,Miranda, Targetscan | Result types: | miRGate_prediction | |
The detailed report is available here: | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
Expression
RNA-SEQ Expression
High: > 1000 TPM value
Medium: Between 11 and 1000 TPMLow: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM
alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | musculoskeletal system | nervous system | renal system | reproductive system | respiratory system | sensory system | adipose tissue | appendage | |
High | |||||||||||||||
Medium | 1 | ||||||||||||||
Low | 162 | 101 | 73 | 17 | 99 | 10 | 305 | 74 | 80 | 3 | 67 | 144 | 7 | 137 | 154 |
Below cutoff | 32 | 25 | 23 | 8 | 19 | 8 | 38 | 23 | 24 | 5 | 4 | 10 | 23 | 21 |
Sequence
Nucleotide Sequences
Reference Sequences
RefSeq Acc Id: | ENST00000578292 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | NR_039873 | ||||||||||||||||||||
RefSeq Status: | PROVISIONAL | ||||||||||||||||||||
Type: | NON-CODING | ||||||||||||||||||||
Position: |
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Sequence: |
Clinical Variants
Name | Type | Condition(s) | Position(s) | Clinical significance |
NM_001012759.1(CTU2):c.804C>T (p.Cys268=) | single nucleotide variant | Malignant melanoma [RCV000071268] | Chr16:88713378 [GRCh38] Chr16:88779786 [GRCh37] Chr16:87307287 [NCBI36] Chr16:16q24.3 |
not provided |
GRCh38/hg38 16q23.3-24.3(chr16:83988570-90081985)x3 | copy number gain | See cases [RCV000135659] | Chr16:83988570..90081985 [GRCh38] Chr16:84022175..90148393 [GRCh37] Chr16:82579676..88675894 [NCBI36] Chr16:16q23.3-24.3 |
likely pathogenic |
GRCh38/hg38 16q23.2-24.3(chr16:80946659-90081985)x3 | copy number gain | See cases [RCV000136898] | Chr16:80946659..90081985 [GRCh38] Chr16:80980556..90148393 [GRCh37] Chr16:79538057..88675894 [NCBI36] Chr16:16q23.2-24.3 |
pathogenic|likely pathogenic |
GRCh38/hg38 16q22.1-24.3(chr16:70749398-90096995)x3 | copy number gain | See cases [RCV000137495] | Chr16:70749398..90096995 [GRCh38] Chr16:70783301..90163403 [GRCh37] Chr16:69340802..88690904 [NCBI36] Chr16:16q22.1-24.3 |
pathogenic |
GRCh38/hg38 16q24.2-24.3(chr16:87848216-90096995)x3 | copy number gain | See cases [RCV000138161] | Chr16:87848216..90096995 [GRCh38] Chr16:87881822..90163403 [GRCh37] Chr16:86439323..88690904 [NCBI36] Chr16:16q24.2-24.3 |
likely pathogenic |
GRCh38/hg38 16q23.3-24.3(chr16:83478453-89932910)x3 | copy number gain | See cases [RCV000137980] | Chr16:83478453..89932910 [GRCh38] Chr16:83512058..89999318 [GRCh37] Chr16:82069559..88526819 [NCBI36] Chr16:16q23.3-24.3 |
likely pathogenic |
GRCh38/hg38 16q21-24.3(chr16:65511483-90096995)x3 | copy number gain | See cases [RCV000139426] | Chr16:65511483..90096995 [GRCh38] Chr16:65545386..90163403 [GRCh37] Chr16:64102887..88690904 [NCBI36] Chr16:16q21-24.3 |
pathogenic |
GRCh38/hg38 16q23.1-24.3(chr16:75377981-90081992)x3 | copy number gain | See cases [RCV000139302] | Chr16:75377981..90081992 [GRCh38] Chr16:75411879..90148400 [GRCh37] Chr16:73969380..88675901 [NCBI36] Chr16:16q23.1-24.3 |
pathogenic |
GRCh38/hg38 16q24.2-24.3(chr16:88662702-88719577)x1 | copy number loss | See cases [RCV000140351] | Chr16:88662702..88719577 [GRCh38] Chr16:88729110..88785985 [GRCh37] Chr16:87256611..87313486 [NCBI36] Chr16:16q24.2-24.3 |
benign |
GRCh38/hg38 16q24.1-24.3(chr16:85552976-90096995)x3 | copy number gain | See cases [RCV000139658] | Chr16:85552976..90096995 [GRCh38] Chr16:85586582..90163403 [GRCh37] Chr16:84144083..88690904 [NCBI36] Chr16:16q24.1-24.3 |
pathogenic |
GRCh38/hg38 16q23.2-24.3(chr16:80717291-90096662)x3 | copy number gain | See cases [RCV000141128] | Chr16:80717291..90096662 [GRCh38] Chr16:80751188..90163070 [GRCh37] Chr16:79308689..88690571 [NCBI36] Chr16:16q23.2-24.3 |
pathogenic |
GRCh38/hg38 16q23.1-24.3(chr16:76336203-90088654)x3 | copy number gain | See cases [RCV000141700] | Chr16:76336203..90088654 [GRCh38] Chr16:76370100..90155062 [GRCh37] Chr16:74927601..88682563 [NCBI36] Chr16:16q23.1-24.3 |
pathogenic |
GRCh38/hg38 16q23.2-24.3(chr16:80067315-90057871)x3 | copy number gain | See cases [RCV000142698] | Chr16:80067315..90057871 [GRCh38] Chr16:80101212..90124279 [GRCh37] Chr16:78658713..88651780 [NCBI36] Chr16:16q23.2-24.3 |
pathogenic |
GRCh38/hg38 16q21-24.3(chr16:64389378-90081985)x3 | copy number gain | See cases [RCV000142578] | Chr16:64389378..90081985 [GRCh38] Chr16:64423281..90148393 [GRCh37] Chr16:62980782..88675894 [NCBI36] Chr16:16q21-24.3 |
pathogenic|likely pathogenic |
GRCh38/hg38 16q12.2-24.3(chr16:52899183-90088654)x3 | copy number gain | See cases [RCV000143425] | Chr16:52899183..90088654 [GRCh38] Chr16:52933095..90155062 [GRCh37] Chr16:51490596..88682563 [NCBI36] Chr16:16q12.2-24.3 |
pathogenic |
GRCh38/hg38 16q24.1-24.3(chr16:86950106-89335814)x1 | copy number loss | See cases [RCV000143624] | Chr16:86950106..89335814 [GRCh38] Chr16:86983712..89402222 [GRCh37] Chr16:85541213..87929723 [NCBI36] Chr16:16q24.1-24.3 |
pathogenic |
GRCh38/hg38 16q23.1-24.3(chr16:78816291-90081985)x3 | copy number gain | See cases [RCV000050840] | Chr16:78816291..90081985 [GRCh38] Chr16:78850188..90148393 [GRCh37] Chr16:77407689..88675894 [NCBI36] Chr16:16q23.1-24.3 |
pathogenic |
GRCh38/hg38 16q21-24.3(chr16:65313395-90081985)x3 | copy number gain | See cases [RCV000052421] | Chr16:65313395..90081985 [GRCh38] Chr16:65347298..90148393 [GRCh37] Chr16:63904799..88675894 [NCBI36] Chr16:16q21-24.3 |
pathogenic |
GRCh38/hg38 16q22.1-24.3(chr16:70514631-90081985)x3 | copy number gain | See cases [RCV000052422] | Chr16:70514631..90081985 [GRCh38] Chr16:70548534..90148393 [GRCh37] Chr16:69106035..88675894 [NCBI36] Chr16:16q22.1-24.3 |
pathogenic |
GRCh38/hg38 16q23.1-24.3(chr16:76873569-90081985)x3 | copy number gain | See cases [RCV000052423] | Chr16:76873569..90081985 [GRCh38] Chr16:76907466..90148393 [GRCh37] Chr16:75464967..88675894 [NCBI36] Chr16:16q23.1-24.3 |
pathogenic |
GRCh38/hg38 16q23.3-24.3(chr16:82173150-90081985)x3 | copy number gain | See cases [RCV000052424] | Chr16:82173150..90081985 [GRCh38] Chr16:82206755..90148393 [GRCh37] Chr16:80764256..88675894 [NCBI36] Chr16:16q23.3-24.3 |
pathogenic |
GRCh38/hg38 16q24.1-24.3(chr16:84707538-90081985)x3 | copy number gain | Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052425]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052425]|See cases [RCV000052425] | Chr16:84707538..90081985 [GRCh38] Chr16:84741144..90148393 [GRCh37] Chr16:83298645..88675894 [NCBI36] Chr16:16q24.1-24.3 |
pathogenic |
GRCh38/hg38 16q24.2-24.3(chr16:87853401-90081985)x3 | copy number gain | See cases [RCV000052428] | Chr16:87853401..90081985 [GRCh38] Chr16:87887007..90148393 [GRCh37] Chr16:86444508..88675894 [NCBI36] Chr16:16q24.2-24.3 |
pathogenic |
GRCh38/hg38 16q24.2-24.3(chr16:87306529-89269079)x1 | copy number loss | See cases [RCV000053362] | Chr16:87306529..89269079 [GRCh38] Chr16:87340135..89335487 [GRCh37] Chr16:85897636..87862988 [NCBI36] Chr16:16q24.2-24.3 |
pathogenic |
GRCh38/hg38 16q24.2-24.3(chr16:88159660-89506042)x1 | copy number loss | See cases [RCV000053363] | Chr16:88159660..89506042 [GRCh38] Chr16:88193266..89572450 [GRCh37] Chr16:86750767..88099951 [NCBI36] Chr16:16q24.2-24.3 |
pathogenic |
GRCh38/hg38 16q24.2-24.3(chr16:88640116-89530475)x1 | copy number loss | See cases [RCV000053380] | Chr16:88640116..89530475 [GRCh38] Chr16:88706524..89596883 [GRCh37] Chr16:87234025..88124384 [NCBI36] Chr16:16q24.2-24.3 |
pathogenic |
GRCh38/hg38 16q24.2-24.3(chr16:88662702-89454555)x1 | copy number loss | See cases [RCV000053381] | Chr16:88662702..89454555 [GRCh38] Chr16:88729110..89520963 [GRCh37] Chr16:87256611..88048464 [NCBI36] Chr16:16q24.2-24.3 |
pathogenic |
Additional Information
External Database Links
Database | Acc Id | Source(s) |
COSMIC | MIR4722 | COSMIC |
Ensembl Genes | ENSG00000284585 | Ensembl, ENTREZGENE |
Ensembl Transcript | ENST00000578292 | ENTREZGENE |
GTEx | ENSG00000284585 | GTEx |
HGNC ID | HGNC:41782 | ENTREZGENE |
Human Proteome Map | MIR4722 | Human Proteome Map |
miRBase | MI0017357 | ENTREZGENE |
NCBI Gene | 100616167 | ENTREZGENE |
RNAcentral | URS000041A3B2 | RNACentral |
URS000047996E | RNACentral | |
URS000075BF79 | RNACentral |