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References
Genomics
miRNA Target Status
Predicted Targets
Summary Value | Count of predictions: | 88583 | Count of gene targets: | 23514 | Count of transcripts: | 65105 | Interacting mature miRNAs: | hsa-miR-4747-3p, hsa-miR-4747-5p | Prediction methods: | Microtar, Miranda, Pita, Rnahybrid, Targetscan | Result types: | miRGate_prediction | |
The detailed report is available here: | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
Expression
RNA-SEQ Expression
High: > 1000 TPM value
Medium: Between 11 and 1000 TPMLow: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM
alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | musculoskeletal system | nervous system | renal system | reproductive system | respiratory system | sensory system | adipose tissue | appendage | |
High | |||||||||||||||
Medium | |||||||||||||||
Low | 23 | 17 | 18 | 7 | 81 | 6 | 45 | 21 | 38 | 8 | 29 | 41 | 1 | 12 | 19 |
Below cutoff | 6 | 5 | 3 | 2 | 18 | 3 | 18 | 20 | 20 | 6 | 14 | 10 | 2 | 8 |
Sequence
Nucleotide Sequences
Reference Sequences
RefSeq Acc Id: | ENST00000584057 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | NR_039902 | ||||||||||||||||||||
RefSeq Status: | PROVISIONAL | ||||||||||||||||||||
Type: | NON-CODING | ||||||||||||||||||||
Position: |
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Sequence: |
Clinical Variants
Name | Type | Condition(s) | Position(s) | Clinical significance |
GRCh38/hg38 19p13.3(chr19:3947934-5196676)x3 | copy number gain | See cases [RCV000134164] | Chr19:3947934..5196676 [GRCh38] Chr19:3947932..5196687 [GRCh37] Chr19:3898932..5147687 [NCBI36] Chr19:19p13.3 |
pathogenic|uncertain significance |
GRCh38/hg38 19p13.3(chr19:259395-6795611)x3 | copy number gain | See cases [RCV000142627] | Chr19:259395..6795611 [GRCh38] Chr19:259395..6795622 [GRCh37] Chr19:210395..6746622 [NCBI36] Chr19:19p13.3 |
pathogenic |
GRCh38/hg38 19p13.3(chr19:3788727-5147354)x1 | copy number loss | See cases [RCV000143614] | Chr19:3788727..5147354 [GRCh38] Chr19:3788725..5147365 [GRCh37] Chr19:3739725..5098365 [NCBI36] Chr19:19p13.3 |
likely pathogenic |
GRCh38/hg38 19p13.3-13.2(chr19:265917-8564134)x3 | copy number gain | Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052876]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052876]|See cases [RCV000052876] | Chr19:265917..8564134 [GRCh38] Chr19:265917..8629018 [GRCh37] Chr19:216917..8535018 [NCBI36] Chr19:19p13.3-13.2 |
pathogenic |
GRCh38/hg38 19p13.3-13.2(chr19:1972245-9648879)x3 | copy number gain | See cases [RCV000052879] | Chr19:1972245..9648879 [GRCh38] Chr19:1972244..9759555 [GRCh37] Chr19:1923244..9620555 [NCBI36] Chr19:19p13.3-13.2 |
pathogenic |
GRCh38/hg38 19p13.3-13.2(chr19:4039158-9176125)x3 | copy number gain | Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052881]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052881]|See cases [RCV000052881] | Chr19:4039158..9176125 [GRCh38] Chr19:4039156..9286801 [GRCh37] Chr19:3990156..9147801 [NCBI36] Chr19:19p13.3-13.2 |
pathogenic |
Additional Information
External Database Links
Database | Acc Id | Source(s) |
COSMIC | MIR4747 | COSMIC |
Ensembl Genes | ENSG00000263409 | Ensembl, ENTREZGENE |
Ensembl Transcript | ENST00000584057 | ENTREZGENE |
GTEx | ENSG00000263409 | GTEx |
HGNC ID | HGNC:41827 | ENTREZGENE |
Human Proteome Map | MIR4747 | Human Proteome Map |
miRBase | MI0017386 | ENTREZGENE |
NCBI Gene | 100616337 | ENTREZGENE |
RNAcentral | URS0000047A8F | RNACentral |
URS0000558A72 | RNACentral | |
URS000075F0D8 | RNACentral |