IRF5P1 (interferon regulatory factor 5 pseudogene 1) - Rat Genome Database

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Gene: IRF5P1 (interferon regulatory factor 5 pseudogene 1) Homo sapiens
Analyze
Symbol: IRF5P1
Name: interferon regulatory factor 5 pseudogene 1
RGD ID: 5132810
HGNC Page HGNC:41981
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: IRF5  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38892,972,596 - 92,974,741 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl892,972,575 - 92,974,738 (+)EnsemblGRCh38hg38GRCh38
GRCh37893,984,824 - 93,986,969 (+)NCBIGRCh37GRCh37hg19GRCh37
Celera890,171,672 - 90,173,817 (+)NCBICelera
Cytogenetic Map8q22.1NCBI
HuRef889,192,204 - 89,194,349 (+)NCBIHuRef
CHM1_1894,024,920 - 94,027,062 (+)NCBICHM1_1
T2T-CHM13v2.0894,097,501 - 94,099,646 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:126
Count of miRNA genes:126
Interacting mature miRNAs:126
Transcripts:ENST00000504852
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 1 1
Below cutoff 107 278 128 14 45 5 245 163 621 8 165 83 9 55 194

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000504852
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl892,972,575 - 92,974,738 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC IRF5P1 COSMIC
Ensembl Genes ENSG00000251347 Ensembl, ENTREZGENE
GTEx ENSG00000251347 GTEx
HGNC ID HGNC:41981 ENTREZGENE
Human Proteome Map IRF5P1 Human Proteome Map
NCBI Gene 100420406 ENTREZGENE