TMSB10P1 (thymosin beta 10 pseudogene 1) - Rat Genome Database

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Gene: TMSB10P1 (thymosin beta 10 pseudogene 1) Homo sapiens
Analyze
Symbol: TMSB10P1
Name: thymosin beta 10 pseudogene 1
RGD ID: 5132516
HGNC Page HGNC:41949
Description: INTERACTS WITH DDT
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: thymosin beta-10-like
Related Functional Gene: TMSB10  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382235,882,117 - 235,882,527 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2235,882,362 - 235,882,493 (-)EnsemblGRCh38hg38GRCh38
GRCh372236,790,761 - 236,791,171 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map2q37.2NCBI
HuRef2228,585,736 - 228,586,146 (-)NCBIHuRef
CHM1_12236,796,554 - 236,796,964 (-)NCBICHM1_1
T2T-CHM13v2.02236,371,941 - 236,372,351 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
DDT  (EXP)

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:203
Count of miRNA genes:197
Interacting mature miRNAs:203
Transcripts:ENST00000415070
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 2 2 2
Low 606 711 343 58 463 20 1214 303 975 65 388 680 40 566 744 1
Below cutoff 624 792 354 105 333 61 926 553 1039 78 296 274 45 299 583 1

Sequence


RefSeq Acc Id: ENST00000415070
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2235,882,362 - 235,882,493 (-)Ensembl
RefSeq Acc Id: XM_003118507
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh372236,791,006 - 236,791,137 (-)RGD

Additional Information

Database Acc Id Source(s)
COSMIC TMSB10P1 COSMIC
Ensembl Genes ENSG00000228499 Ensembl
GTEx ENSG00000228499 GTEx
HGNC ID HGNC:41949 ENTREZGENE
Human Proteome Map TMSB10P1 Human Proteome Map
NCBI Gene 100506723 ENTREZGENE