RBMX2P5 (RBMX2 pseudogene 5) - Rat Genome Database

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Gene: RBMX2P5 (RBMX2 pseudogene 5) Homo sapiens
Analyze
Symbol: RBMX2P5
Name: RBMX2 pseudogene 5
RGD ID: 5131394
HGNC Page HGNC:39927
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: RNA binding motif protein, X-linked 2 pseudogene 5
Related Functional Gene: RBMX2  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38580,330,780 - 80,332,583 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl580,331,573 - 80,332,541 (-)EnsemblGRCh38hg38GRCh38
GRCh37579,626,599 - 79,628,402 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36579,663,148 - 79,664,116 (-)NCBINCBI36Build 36hg18NCBI36
Celera575,528,622 - 75,529,680 (-)NCBICelera
Cytogenetic Map5q14.1NCBI
HuRef574,834,735 - 74,836,580 (-)NCBIHuRef
CHM1_1579,059,719 - 79,061,529 (-)NCBICHM1_1
T2T-CHM13v2.0580,814,746 - 80,816,547 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:167
Count of miRNA genes:134
Interacting mature miRNAs:136
Transcripts:ENST00000424312, ENST00000598089
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 251
Low 22 1 37 9 42 9 35 5 17 40 148 92 1 4
Below cutoff 712 767 471 160 401 127 1355 706 1392 184 356 560 44 327 821 3

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000424312
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl580,331,573 - 80,332,541 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RBMX2P5 COSMIC
Ensembl Genes ENSG00000227087 Ensembl
GTEx ENSG00000227087 GTEx
HGNC ID HGNC:39927 ENTREZGENE
Human Proteome Map RBMX2P5 Human Proteome Map
NCBI Gene 391804 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-05-01 RBMX2P5  RBMX2 pseudogene 5    RNA binding motif protein, X-linked 2 pseudogene 5  Symbol and/or name change 5135510 APPROVED