KRT8P31 (keratin 8 pseudogene 31) - Rat Genome Database

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Pathways
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Gene: KRT8P31 (keratin 8 pseudogene 31) Homo sapiens
Analyze
Symbol: KRT8P31
Name: keratin 8 pseudogene 31
RGD ID: 5130837
HGNC Page HGNC:39865
Description: INTERACTS WITH lipopolysaccharide; S-(1,2-dichlorovinyl)-L-cysteine
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: KRT8  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38560,743,317 - 60,745,044 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl560,743,563 - 60,744,970 (-)EnsemblGRCh38hg38GRCh38
GRCh37560,039,144 - 60,040,871 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36560,075,145 - 60,079,855 (-)NCBINCBI36Build 36hg18NCBI36
Celera556,980,074 - 56,981,754 (-)NCBICelera
Cytogenetic Map5q12.1NCBI
HuRef556,997,188 - 56,998,916 (-)NCBIHuRef
CHM1_1560,038,922 - 60,040,650 (-)NCBICHM1_1
T2T-CHM13v2.0561,559,809 - 61,561,536 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:390
Count of miRNA genes:346
Interacting mature miRNAs:379
Transcripts:ENST00000504812
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1
Low 2 3 2 1 9 1 51 50 2 6 13 34
Below cutoff 831 270 443 124 220 64 1679 347 1923 101 331 531 65 416 957 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000504812
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl560,743,563 - 60,744,970 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC KRT8P31 COSMIC
Ensembl Genes ENSG00000250148 Ensembl, ENTREZGENE
GTEx ENSG00000250148 GTEx
HGNC ID HGNC:39865 ENTREZGENE
Human Proteome Map KRT8P31 Human Proteome Map
NCBI Gene 728167 ENTREZGENE