PSMC1P13 (proteasome 26S subunit, ATPase 1 pseudogene 13) - Rat Genome Database

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Gene: PSMC1P13 (proteasome 26S subunit, ATPase 1 pseudogene 13) Homo sapiens
Analyze
Symbol: PSMC1P13
Name: proteasome 26S subunit, ATPase 1 pseudogene 13
RGD ID: 5130571
HGNC Page HGNC:39788
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: proteasome (prosome, macropain) 26S subunit, ATPase, 1 pseudogene 13
Related Functional Gene: PSMC1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381369,893,856 - 69,895,367 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1369,894,101 - 69,895,085 (-)EnsemblGRCh38hg38GRCh38
GRCh371370,467,988 - 70,469,499 (-)NCBIGRCh37GRCh37hg19GRCh37
Celera1351,370,028 - 51,371,543 (-)NCBICelera
Cytogenetic Map13q21.33NCBI
HuRef1351,169,486 - 51,171,021 (-)NCBIHuRef
CHM1_11370,435,547 - 70,437,082 (-)NCBICHM1_1
T2T-CHM13v2.01369,115,757 - 69,117,268 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:190
Count of miRNA genes:181
Interacting mature miRNAs:190
Transcripts:ENST00000458195
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system adipose tissue appendage
High
Medium
Low 2 1 3 2 2
Below cutoff 17 10 25 3 15 3 17 12 139 5 27 11 4 13

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000458195
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1369,894,101 - 69,895,085 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC PSMC1P13 COSMIC
Ensembl Genes ENSG00000232314 Ensembl
GTEx ENSG00000232314 GTEx
HGNC ID HGNC:39788 ENTREZGENE
Human Proteome Map PSMC1P13 Human Proteome Map
NCBI Gene 100422305 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-04-12 PSMC1P13  proteasome 26S subunit, ATPase 1 pseudogene 13    proteasome (prosome, macropain) 26S subunit, ATPase, 1 pseudogene 13  Symbol and/or name change 5135510 APPROVED