GYG1P1 (glycogenin 1 pseudogene 1) - Rat Genome Database

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Gene: GYG1P1 (glycogenin 1 pseudogene 1) Homo sapiens
Analyze
Symbol: GYG1P1
Name: glycogenin 1 pseudogene 1
RGD ID: 5129386
HGNC Page HGNC:39712
Description:
Type: pseudo (Ensembl: unprocessed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: GYG1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38873,904,599 - 73,915,106 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl873,905,357 - 73,915,010 (-)EnsemblGRCh38hg38GRCh38
GRCh37874,816,834 - 74,827,341 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36874,980,143 - 74,989,799 (-)NCBINCBI36Build 36hg18NCBI36
Celera870,814,530 - 70,824,977 (-)NCBICelera
Cytogenetic Map8q21.11NCBI
HuRef870,307,633 - 70,318,140 (-)NCBIHuRef
CHM1_1874,868,821 - 74,879,307 (-)NCBICHM1_1
T2T-CHM13v2.0874,333,841 - 74,344,348 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:93
Count of miRNA genes:89
Interacting mature miRNAs:90
Transcripts:ENST00000460864
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 2 20 1 67 18 14 4 83 4 2 17
Below cutoff 793 1117 295 79 593 35 1357 1108 897 73 554 345 48 275 1104 2

Sequence


RefSeq Acc Id: ENST00000460864
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl873,905,357 - 73,915,010 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC GYG1P1 COSMIC
Ensembl Genes ENSG00000251633 Ensembl, ENTREZGENE
GTEx ENSG00000251633 GTEx
HGNC ID HGNC:39712 ENTREZGENE
Human Proteome Map GYG1P1 Human Proteome Map
NCBI Gene 100132965 ENTREZGENE