CHCHD2P2 (coiled-coil-helix-coiled-coil-helix domain containing 2 pseudogene 2) - Rat Genome Database

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Gene: CHCHD2P2 (coiled-coil-helix-coiled-coil-helix domain containing 2 pseudogene 2) Homo sapiens
Analyze
Symbol: CHCHD2P2
Name: coiled-coil-helix-coiled-coil-helix domain containing 2 pseudogene 2
RGD ID: 5129003
HGNC Page HGNC:39586
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: CHCHD2  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38569,333,866 - 69,334,619 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl569,333,929 - 69,334,249 (+)EnsemblGRCh38hg38GRCh38
GRCh37568,629,693 - 68,630,446 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36568,665,457 - 68,666,210 (+)NCBINCBI36Build 36hg18NCBI36
Celera565,632,836 - 65,633,276 (+)NCBICelera
Cytogenetic Map5q13.2NCBI
HuRef565,585,496 - 65,586,257 (+)NCBIHuRef
CHM1_1568,629,443 - 68,630,204 (+)NCBICHM1_1
T2T-CHM13v2.0570,159,568 - 70,160,321 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:142
Count of miRNA genes:136
Interacting mature miRNAs:142
Transcripts:ENST00000503744
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
RH103090  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37756,169,368 - 56,169,556UniSTSGRCh37
GRCh37568,630,162 - 68,630,349UniSTSGRCh37
Build 36568,665,918 - 68,666,105RGDNCBI36
Celera565,633,264 - 65,633,451RGD
Celera767,222,277 - 67,222,465UniSTS
Cytogenetic Map5q13.2UniSTS
Cytogenetic Map7p11.2UniSTS
HuRef565,585,965 - 65,586,152UniSTS
HuRef755,983,588 - 55,983,776UniSTS
CRA_TCAGchr7v2756,173,615 - 56,173,803UniSTS
GeneMap99-GB4 RH Map7264.55UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 2 185 1 1 2 13
Low 1622 1873 1175 252 802 156 3253 1495 2316 262 983 1184 105 897 2232
Below cutoff 714 946 403 243 663 185 849 620 1273 88 369 331 64 273 484 4

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000503744
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl569,333,929 - 69,334,249 (+)Ensembl
RefSeq Acc Id: XR_015499
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
Build 36568,665,457 - 68,666,210 (+)NCBI Archive

Additional Information

Database Acc Id Source(s)
COSMIC CHCHD2P2 COSMIC
Ensembl Genes ENSG00000215006 Ensembl
GTEx ENSG00000215006 GTEx
HGNC ID HGNC:39586 ENTREZGENE
Human Proteome Map CHCHD2P2 Human Proteome Map
NCBI Gene 728324 ENTREZGENE