CENPIP1 (centromere protein I pseudogene 1) - Rat Genome Database

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Gene: CENPIP1 (centromere protein I pseudogene 1) Homo sapiens
Analyze
Symbol: CENPIP1
Name: centromere protein I pseudogene 1
RGD ID: 5128968
HGNC Page HGNC:39575
Description:
Type: pseudo (Ensembl: unprocessed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: CENPI  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381319,126,484 - 19,131,556 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1319,126,399 - 19,139,611 (+)EnsemblGRCh38hg38GRCh38
GRCh371319,700,624 - 19,705,696 (+)NCBIGRCh37GRCh37hg19GRCh37
Celera13762,517 - 767,680 (+)NCBICelera
Cytogenetic Map13q12.11NCBI
HuRef13505,846 - 510,983 (+)NCBIHuRef
CHM1_11319,668,218 - 19,673,381 (+)NCBICHM1_1
T2T-CHM13v2.01318,321,642 - 18,326,713 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:105
Count of miRNA genes:103
Interacting mature miRNAs:105
Transcripts:ENST00000425713
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
G64219  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371319,703,979 - 19,704,152UniSTSGRCh37
Build 361318,601,979 - 18,602,152RGDNCBI36
Celera13765,879 - 766,052RGD
HuRef13509,202 - 509,357UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1 4 2 1
Low 9 7 4 10 4 16 4 5 3 324 20
Below cutoff 48 32 34 11 54 11 65 39 55 13 99 39 1 18 40 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000425713
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1319,126,399 - 19,139,611 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC CENPIP1 COSMIC
Ensembl Genes ENSG00000224778 Ensembl
GTEx ENSG00000224778 GTEx
HGNC ID HGNC:39575 ENTREZGENE
Human Proteome Map CENPIP1 Human Proteome Map
NCBI Gene 100419337 ENTREZGENE