CST9LP1 (cystatin 9-like pseudogene 1) - Rat Genome Database

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Gene: CST9LP1 (cystatin 9-like pseudogene 1) Homo sapiens
Analyze
No known orthologs.
Symbol: CST9LP1
Name: cystatin 9-like pseudogene 1
RGD ID: 5013874
HGNC Page HGNC:39552
Description: Predicted to enable cysteine-type endopeptidase inhibitor activity. Predicted to be involved in antimicrobial humoral response. Located in extracellular space.
Type: pseudo (Ensembl: unprocessed_pseudogene)
RefSeq Status: INFERRED
Previously known as: CTES7C
RGD Orthologs
Alliance Genes
More Info homologs ...
Related Functional Gene: CST9  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382023,548,536 - 23,548,907 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2023,547,764 - 23,550,652 (-)EnsemblGRCh38hg38GRCh38
GRCh372023,529,173 - 23,529,544 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362023,476,401 - 23,479,289 (-)NCBINCBI36Build 36hg18NCBI36
Celera2023,601,761 - 23,604,652 (-)NCBICelera
Cytogenetic Map20p11.21NCBI
HuRef2023,489,793 - 23,492,685 (-)NCBIHuRef
CHM1_12023,528,184 - 23,531,074 (-)NCBICHM1_1
T2T-CHM13v2.02023,608,094 - 23,608,465 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11780052   PMID:20565543   PMID:21805676   PMID:21873635  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:300
Count of miRNA genes:290
Interacting mature miRNAs:297
Transcripts:ENST00000376987
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium 1
Low 12 1 13 2
Below cutoff 37 45 18 7 39 4 58 33 70 3 236 32 3 16 42

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000376987
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2023,547,764 - 23,550,652 (-)Ensembl
Protein Sequences
GenBank Protein Q5W188 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5W188-F1-model_v2 AlphaFold Q5W188 1-147 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:39552 AgrOrtholog
COSMIC CST9LP1 COSMIC
Ensembl Genes ENSG00000204662 Ensembl
Gene3D-CATH 3.10.450.10 UniProtKB/Swiss-Prot
GTEx ENSG00000204662 GTEx
HGNC ID HGNC:39552 ENTREZGENE
Human Proteome Map CST9LP1 Human Proteome Map
InterPro CST9-like UniProtKB/Swiss-Prot
  Cystatin_dom UniProtKB/Swiss-Prot
  Cystatin_sf UniProtKB/Swiss-Prot
NCBI Gene 128820 ENTREZGENE
PANTHER PTHR46945 UniProtKB/Swiss-Prot
  PTHR46945:SF2 UniProtKB/Swiss-Prot
Pfam Cystatin UniProtKB/Swiss-Prot
Superfamily-SCOP SSF54403 UniProtKB/Swiss-Prot
UniProt CST9P_HUMAN UniProtKB/Swiss-Prot, ENTREZGENE