Tcstv4 (Tcstv family member 4) - Rat Genome Database

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Gene: Tcstv4 (Tcstv family member 4) Mus musculus
Analyze
Symbol: Tcstv4 (Ensembl: BC147527)
Name: Tcstv family member 4 (Ensembl:cDNA sequence BC147527)
RGD ID: 4890334
MGI Page MGI
Description:
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2-cell-stage, variable group, member 3-like
Related Pseudogenes: Gm8953  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3913120,761,833 - 120,770,379 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl13120,761,928 - 120,770,315 (+)EnsemblGRCm39 Ensembl
GRCm3813120,300,233 - 120,308,843 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl13120,300,392 - 120,308,779 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map13D2.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:16141072   PMID:16141073  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:131
Count of miRNA genes:128
Interacting mature miRNAs:130
Transcripts:ENSMUST00000081558
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300939Hrtfm6_mheart failure modifier 6 (mouse)Not determined1391383692120883175Mouse
1300876Tanidd2_mtally ho associated non-insulin dependednt diabetes mellitus 2 (mouse)Not determined1391965303120883175Mouse
1301142Heal2_mwound healing/regeneration 2 (mouse)Not determined1393875267120883175Mouse
4142338Skmw18_mskeletal muscle weight 18 (mouse)Not determined1394528399120883175Mouse
1558763Gct9_mgranulosa cell tumorigenesis 9 (mouse)Not determined1395036824120883175Mouse
1357468Rplag_mreduced platelet aggregation (mouse)Not determined1395502130120883175Mouse
14746974Manh75_mmandible shape 75 (mouse)1399386647120883175Mouse
12879496Fexq2_mfear expression QTL 2 (mouse)13100741519120883175Mouse
4142400Tgq24_mtriglyceride QTL 24 (mouse)Not determined102602630120883175Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000081558   ⟹   ENSMUSP00000111141
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl13120,769,682 - 120,770,185 (+)Ensembl
GRCm38.p6 Ensembl13120,308,146 - 120,308,649 (+)Ensembl
RefSeq Acc Id: ENSMUST00000225029   ⟹   ENSMUSP00000153422
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl13120,761,928 - 120,770,315 (+)Ensembl
GRCm38.p6 Ensembl13120,300,392 - 120,308,779 (+)Ensembl
RefSeq Acc Id: NM_001037925   ⟹   NP_001033014
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3913120,761,833 - 120,770,374 (+)NCBI
GRCm3813120,300,392 - 120,308,843 (+)NCBI
cM Map13 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001424720   ⟹   NP_001411649
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3913120,761,833 - 120,770,374 (+)NCBI
RefSeq Acc Id: NM_001424721   ⟹   NP_001411650
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3913120,761,833 - 120,770,374 (+)NCBI
RefSeq Acc Id: NM_001424722   ⟹   NP_001411651
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3913120,761,833 - 120,770,374 (+)NCBI
RefSeq Acc Id: XM_017315556   ⟹   XP_017171045
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3913120,767,515 - 120,770,379 (+)NCBI
GRCm3813120,305,979 - 120,308,843 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_001033014   ⟸   NM_001037925
- UniProtKB: Q3V185 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017171045   ⟸   XM_017315556
- Peptide Label: isoform X1
- UniProtKB: Q3V185 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000153422   ⟸   ENSMUST00000225029
RefSeq Acc Id: ENSMUSP00000111141   ⟸   ENSMUST00000081558
RefSeq Acc Id: NP_001411651   ⟸   NM_001424722
- UniProtKB: Q3V185 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001411650   ⟸   NM_001424721
- UniProtKB: Q3V185 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001411649   ⟸   NM_001424720
- UniProtKB: Q3V185 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q3V185-F1-model_v2 AlphaFold Q3V185 1-167 view protein structure


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000094796 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000081558.8 UniProtKB/TrEMBL
  ENSMUST00000225029 ENTREZGENE
  ENSMUST00000225029.2 UniProtKB/TrEMBL
InterPro DUF1438 UniProtKB/TrEMBL
KEGG Report mmu:625360 UniProtKB/TrEMBL
MGD MGI:4840510 ENTREZGENE
NCBI Gene 625360 ENTREZGENE
PANTHER 2-CELL-STAGE, VARIABLE GROUP, MEMBER 1-RELATED UniProtKB/TrEMBL
  PTHR31647 UniProtKB/TrEMBL
Pfam DUF1438 UniProtKB/TrEMBL
PhenoGen Tcstv4 PhenoGen
UniProt Q3V185 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-10-23 Tcstv4  Tcstv family member 4  BC147527  cDNA sequence BC147527  Symbol and/or name updated 27372883 PROVISIONAL
2023-10-18 BC147527  cDNA sequence BC147527  Tcstv4  cDNA sequence BC147527  Symbol and/or name change 5135510 APPROVED
2023-10-10 Tcstv4  cDNA sequence BC147527  BC147527  cDNA sequence BC147527  Symbol and/or name change 5135510 APPROVED