Mir1b (microRNA 1b) - Rat Genome Database
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Gene: Mir1b (microRNA 1b) Mus musculus
Analyze
Symbol: Mir1b
Name: microRNA 1b
RGD ID: 4889772
MGI Page MGI
Description: Involved in negative regulation of gene expression. Is expressed in heart.
Type: ncrna
RefSeq Status: PROVISIONAL
Also known as: mir-1b; Mir1-2-as; Mir1-2as; Mirn; Mirn1-2as; mmu-mir-; mmu-mir-1-2-as; mmu-mir-1b
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391810,785,446 - 10,785,567 (+)NCBIGRCm39mm39
GRCm39 Ensembl1810,785,446 - 10,785,567 (+)Ensembl
GRCm381810,785,446 - 10,785,567 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1810,785,446 - 10,785,567 (+)EnsemblGRCm38mm10GRCm38
Celera1810,815,430 - 10,815,551 (+)NCBICelera
Cytogenetic Map18A1NCBI
cM Map185.4NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

References
Additional References at PubMed
PMID:16369549   PMID:16381832   PMID:17989215   PMID:19726871   PMID:20413612   PMID:21037258   PMID:21643937   PMID:21690310   PMID:21718763   PMID:21730146   PMID:23571754   PMID:24161931  
PMID:25083871   PMID:25238743   PMID:25415383   PMID:29775643   PMID:30097120  


Genomics


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1558849W3q15_mweight 3 weeks QTL 15 (mouse)Not determined18504111961139571Mouse
1558873Hrtfm7_mheart failure modifier 7 (mouse)Not determined18795390741954049Mouse
4142127Rafaril_mRafar interacting locus (mouse)Not determined18123108555Mouse
4142250Idd21.3_minsulin dependent diabetes susceptibility 21.3 (mouse)Not determined18610840421513420Mouse
13207589Mwmlpa3_mMorris water maze latency to platform, all, 3 (mouse)18133414682Mouse
14928307Manh83_mmandible shape 83 (mouse)18126902168Mouse
13207585Mwmlpt3_mMorris water maze latency to platform, training, 3 (mouse)18133414682Mouse
12801458Intmrm3_mintima/media ratio modifier 3 (mouse)18131587699Mouse
12801462Intim3_mintima modifier 3 (mouse)18131587699Mouse
27226723Tibw9_mtibia width 9, proximal, 16 week (mouse)18320000060800000Mouse
11354953Mom21_mmodifier of Min 21 (mouse)18128760766Mouse

miRNA Target Status

Predicted Targets
Summary Value
Count of predictions:18335
Count of gene targets:8695
Count of transcripts:13944
Interacting mature miRNAs:mmu-miR-1b-3p, mmu-miR-1b-5p
Prediction methods:Microtar, Miranda, Pita, Pita,Targetscan, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000117012
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1810,785,446 - 10,785,567 (+)Ensembl
RefSeq Acc Id: NR_035413
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391810,785,446 - 10,785,567 (+)NCBI
GRCm381810,785,446 - 10,785,567 (+)ENTREZGENE
Celera1810,815,430 - 10,815,551 (+)ENTREZGENE
cM Map18 ENTREZGENE
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000080662 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000117012 ENTREZGENE
MGD MGI:3783373 ENTREZGENE
miRBase MI0006283 ENTREZGENE
NCBI Gene 100316783 ENTREZGENE
PhenoGen Mir1b PhenoGen
RNAcentral URS000029AE9F RNACentral
  URS00005869B5 RNACentral
  URS000075C0C2 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-08-17 Mir1b  microRNA 1b  Mir1b  microRNA 1b  Symbol and/or name change 5135510 APPROVED
2011-07-27 Mir1b  microRNA 1b  Mir1-2as  microRNA 1-2, antisense  Symbol and/or name change 5135510 APPROVED