Mir3475 (microRNA 3475) - Rat Genome Database

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Gene: Mir3475 (microRNA 3475) Mus musculus
Analyze
Symbol: Mir3475
Name: microRNA 3475
RGD ID: 4888710
MGI Page MGI
Description: microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]
Type: ncrna
RefSeq Status: PROVISIONAL
Also known as: mir-3475; mmu-mir-3475
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X139,211,697 - 139,211,761 (+)NCBIGRCm39mm39
GRCm39 EnsemblX139,211,697 - 139,211,761 (+)Ensembl
GRCm38X140,310,948 - 140,311,012 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX140,310,948 - 140,311,012 (+)EnsemblGRCm38mm10GRCm38
CeleraX123,571,155 - 123,571,219 (+)NCBICelera
Cytogenetic MapXF1NCBI
cM MapX61.35NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:16381832   PMID:16954537   PMID:20215419   PMID:21037258   PMID:23034410  


Genomics


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357433Dbts2_mdiabetes 2 (mouse)Not determinedX7360056151324042Mouse
13824980Ferq1_mgenetic fertility QTL 1 (mouse)X55000000150000000Mouse
13208552Wght12_mweight 12 (mouse)X95000000151000000Mouse
13208556Lgth14_mbody length 14 (mouse)X95000000151000000Mouse
1357823Spha3_msperm head anomaly 3 (mouse)Not determinedX103012242163975945Mouse
1301209Cia19_mcollagen induced arthritis 19 (mouse)Not determinedX122083468161430042Mouse
25314309Syncl5_msynaptonemal complex length 5 (mouse)X123000000153800000Mouse
10412164Cmv2_mcytomegalovirus resistance 2 (mouse)Not determinedX126902153160902273Mouse
13824981Svwq2_mseminal vesicle weight QTL 2 (mouse)X130000000155000000Mouse
1558900Bw3_mbody weight QTL 3 (mouse)Not determinedX134639291166515599Mouse
1301276Tswt_mtestis weight (mouse)Not determinedX139475662152006342Mouse

miRNA Target Status

Predicted Targets
Summary Value
Count of predictions:26696
Count of gene targets:10812
Count of transcripts:18891
Interacting mature miRNAs:mmu-miR-3475-3p, mmu-miR-3475-5p
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000175361
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX139,211,697 - 139,211,761 (+)Ensembl
GRCm38.p6 EnsemblX140,310,948 - 140,311,012 (+)Ensembl
RefSeq Acc Id: NR_037208
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X139,211,697 - 139,211,761 (+)NCBI
GRCm38X140,310,948 - 140,311,012 (+)ENTREZGENE
CeleraX123,571,155 - 123,571,219 (+)ENTREZGENE
cM MapX ENTREZGENE
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000093102 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000175361 ENTREZGENE
MGD MGI:4441442 ENTREZGENE
miRBase MI0004220 ENTREZGENE
NCBI Gene 100499512 ENTREZGENE
PhenoGen Mir3475 PhenoGen
RNAcentral URS00002F19E1 RNACentral
  URS000075AA36 RNACentral
  URS000075DD33 RNACentral