Mir3473a (microRNA 3473a) - Rat Genome Database
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Gene: Mir3473a (microRNA 3473a) Mus musculus
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Symbol: Mir3473a
Name: microRNA 3473a
RGD ID: 4888709
MGI Page MGI
Description: microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]
Type: ncrna
RefSeq Status: PROVISIONAL
Also known as: mir-3473a; Mir3473; mmu-mir-3473; mmu-mir-3473a
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X161,657,914 - 161,657,991 (-)NCBIGRCm39mm39
GRCm38X162,874,918 - 162,874,995 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX162,874,918 - 162,874,995 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic MapXF4NCBI
cM MapX75.07NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:16381832   PMID:20215419   PMID:21037258  


Genomics


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357823Spha3_msperm head anomaly 3 (mouse)Not determinedX103012242163975945Mouse
1558900Bw3_mbody weight QTL 3 (mouse)Not determinedX134639291166515599Mouse
1302000Pgia25_mproteoglycan induced arthritis 2 (mouse)Not determinedX145691384171031299Mouse
10401118Pgia39_mproteoglycan induced arthritis 39 (mouse)Not determinedX145691384171031299Mouse
1357619Obsty5_mobesity 5 (mouse)Not determinedX161429897165366288Mouse

miRNA Target Status

Predicted Targets
Summary Value
Count of predictions:17245
Count of gene targets:7776
Count of transcripts:12389
Interacting mature miRNAs:mmu-miR-3473a
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000175011
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 EnsemblX162,874,918 - 162,874,995 (-)Ensembl
RefSeq Acc Id: NR_037311
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X161,657,914 - 161,657,991 (-)NCBI
GRCm38X162,874,918 - 162,874,995 (-)ENTREZGENE
cM MapX ENTREZGENE
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000092752 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000175011 ENTREZGENE
MGD MGI:4441440 ENTREZGENE
miRBase MI0014706 ENTREZGENE
NCBI Gene 100499528 ENTREZGENE
PhenoGen Mir3473a PhenoGen
RNAcentral URS0000314C08 RNACentral
  URS000075DDFD RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-05-27 Mir3473a  microRNA 3473a  Mir3473  microRNA 3473  Symbol and/or name change 5135510 APPROVED