Mir1298 (microRNA 1298) - Rat Genome Database

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Gene: Mir1298 (microRNA 1298) Mus musculus
Analyze
Symbol: Mir1298
Name: microRNA 1298
RGD ID: 4888690
MGI Page MGI
Description: Orthologous to human MIR1298 (microRNA 1298).
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Previously known as: mir-1298; mmu-mir-1298
RGD Orthologs
Human
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X145,847,901 - 145,847,998 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX145,847,901 - 145,847,998 (+)EnsemblGRCm39 Ensembl
GRCm38X147,064,905 - 147,065,002 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX147,064,905 - 147,065,002 (+)EnsemblGRCm38mm10GRCm38
CeleraX131,005,244 - 131,005,341 (+)NCBICelera
Cytogenetic MapXF2NCBI
cM MapX68.46NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:16381832   PMID:16954537   PMID:20413612   PMID:21037258  


Genomics

Comparative Map Data
Mir1298
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X145,847,901 - 145,847,998 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX145,847,901 - 145,847,998 (+)EnsemblGRCm39 Ensembl
GRCm38X147,064,905 - 147,065,002 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX147,064,905 - 147,065,002 (+)EnsemblGRCm38mm10GRCm38
CeleraX131,005,244 - 131,005,341 (+)NCBICelera
Cytogenetic MapXF2NCBI
cM MapX68.46NCBI
MIR1298
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X114,715,233 - 114,715,344 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX114,715,233 - 114,715,344 (+)EnsemblGRCh38hg38GRCh38
GRCh37X113,949,650 - 113,949,761 (+)NCBIGRCh37GRCh37hg19GRCh37
CeleraX114,384,841 - 114,384,952 (+)NCBICelera
Cytogenetic MapXq23NCBI
HuRefX103,536,186 - 103,536,297 (+)NCBIHuRef
CHM1_1X113,860,636 - 113,860,747 (+)NCBICHM1_1
T2T-CHM13v2.0X113,123,739 - 113,123,850 (+)NCBIT2T-CHM13v2.0

Variants

.
Variants in Mir1298
3 total Variants
miRNA Target Status

Predicted Targets
Summary Value
Count of predictions:16378
Count of gene targets:8484
Count of transcripts:13474
Interacting mature miRNAs:mmu-miR-1298-3p, mmu-miR-1298-5p
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10412164Cmv2_mcytomegalovirus resistance 2 (mouse)Not determinedX125685149159685269Mouse
1558900Bw3_mbody weight QTL 3 (mouse)Not determinedX133540040165298595Mouse
1301209Cia19_mcollagen induced arthritis 19 (mouse)Not determinedX120993165160213038Mouse
13208552Wght12_mweight 12 (mouse)X94043606149782996Mouse
1301276Tswt_mtestis weight (mouse)Not determinedX138376411150789338Mouse
13824981Svwq2_mseminal vesicle weight QTL 2 (mouse)X128900749153782996Mouse
25314309Syncl5_msynaptonemal complex length 5 (mouse)X121909697152582996Mouse
13208556Lgth14_mbody length 14 (mouse)X94043606149782996Mouse
10401118Pgia39_mproteoglycan induced arthritis 39 (mouse)Not determinedX144474380169476592Mouse
1357433Dbts2_mdiabetes 2 (mouse)Not determinedX7226295150107038Mouse
13824980Ferq1_mgenetic fertility QTL 1 (mouse)X54045360148782996Mouse
1302000Pgia25_mproteoglycan induced arthritis 2 (mouse)Not determinedX144474380169476592Mouse
1357823Spha3_msperm head anomaly 3 (mouse)Not determinedX102055848162758941Mouse


Expression


Sequence


RefSeq Acc Id: ENSMUST00000116681
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX145,847,901 - 145,847,998 (+)Ensembl
GRCm38.p6 EnsemblX147,064,905 - 147,065,002 (+)Ensembl
RefSeq Acc Id: NR_037210
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X145,847,901 - 145,847,998 (+)NCBI
GRCm38X147,064,905 - 147,065,002 (+)ENTREZGENE
CeleraX131,005,244 - 131,005,341 (+)ENTREZGENE
cM MapX ENTREZGENE
Sequence:

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:4834221 AgrOrtholog
Ensembl Genes ENSMUSG00000080331 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000116681 ENTREZGENE
MGD MGI:4834221 ENTREZGENE
miRBase MI0004300 ENTREZGENE
NCBI Gene 100526462 ENTREZGENE
PhenoGen Mir1298 PhenoGen
RNAcentral URS000019904A RNACentral
  URS00003DF3AE RNACentral
  URS000075B928 RNACentral