Mir3060 (microRNA 3060) - Rat Genome Database

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Gene: Mir3060 (microRNA 3060) Mus musculus
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Symbol: Mir3060
Name: microRNA 3060
RGD ID: 4888688
MGI Page MGI
Description: microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Previously known as: mir-3060; mmu-mir-3060
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39114,089,364 - 4,089,446 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl114,089,364 - 4,089,446 (+)EnsemblGRCm39 Ensembl
GRCm38114,139,364 - 4,139,446 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl114,139,364 - 4,139,446 (+)EnsemblGRCm38mm10GRCm38
Celera114,635,708 - 4,635,790 (+)NCBICelera
Cytogenetic Map11A1NCBI
cM Map112.9NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:16381832   PMID:20413612   PMID:21037258  


Genomics

Variants

.
Variants in Mir3060
5 total Variants
miRNA Target Status

Predicted Targets
Summary Value
Count of predictions:17622
Count of gene targets:8760
Count of transcripts:14074
Interacting mature miRNAs:mmu-miR-3060-3p, mmu-miR-3060-5p
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357722Vtbt11_mvertebral trabecular bone trait 11 (mouse)Not determined11123880487Mouse
1300768Tshp9_mtooth shape 9 (mouse)Not determined11125976374Mouse
1301765Skull15_mskull morphology 15 (mouse)Not determined11125976374Mouse
1300661Lmr6_mleishmaniasis resistance 6 (mouse)Not determined11125976374Mouse
10044008Hbnr15_mHeligmosomoides bakeri nematode resistance 15 (mouse)Not determined1122705234227232Mouse
1300599Cocrb11_mcocaine related behavior 11 (mouse)Not determined11267035536671472Mouse
27095914Pglq16_mpelvic girdle length QTL 16, 16 week (mouse)11325000018150000Mouse
27095919Pglq10_mpelvic girdle length QTL 10, 10 week (mouse)11325000018450000Mouse
27095925Pglq5_mpelvic girdle length QTL 5, 5 week (mouse)11325000019750000Mouse
27095904Scvln12_msacral vertebrae length 2, 10 week (mouse)11325000034495048Mouse
27095909Scvln6_msacral vertebrae length 2, 5 week (mouse)11325000044090827Mouse
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11325000060690826Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11325000062890826Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse


Expression


Sequence


RefSeq Acc Id: ENSMUST00000175339
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl114,089,364 - 4,089,446 (+)Ensembl
GRCm38.p6 Ensembl114,139,364 - 4,139,446 (+)Ensembl
RefSeq Acc Id: NR_037220
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39114,089,364 - 4,089,446 (+)NCBI
GRCm38114,139,364 - 4,139,446 (+)ENTREZGENE
Celera114,635,708 - 4,635,790 (+)ENTREZGENE
cM Map11 ENTREZGENE
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000093080 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000175339 ENTREZGENE
MGD MGI:4834232 ENTREZGENE
miRBase MI0014022 ENTREZGENE
NCBI Gene 100526466 ENTREZGENE
PhenoGen Mir3060 PhenoGen
RNAcentral URS0000320704 RNACentral
  URS000075C3EB RNACentral
  URS000075E040 RNACentral