Mir3064 (microRNA 3064) - Rat Genome Database
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Gene: Mir3064 (microRNA 3064) Mus musculus
Analyze
Symbol: Mir3064
Name: microRNA 3064
RGD ID: 4888683
MGI Page MGI
Description: Orthologous to human MIR3064 (microRNA 3064).
Type: ncrna
RefSeq Status: PROVISIONAL
Also known as: mir-3064; mmu-mir-3064
RGD Orthologs
Human
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911106,673,519 - 106,673,585 (-)NCBIGRCm39mm39
GRCm3811106,782,693 - 106,782,759 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11106,782,693 - 106,782,759 (-)EnsemblGRCm38mm10GRCm38
Celera11118,513,904 - 118,513,970 (-)NCBICelera
Cytogenetic Map11E1NCBI
cM Map1170.02NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:16381832   PMID:20413612   PMID:21037258   PMID:29704238  


Genomics

Comparative Map Data
Mir3064
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911106,673,519 - 106,673,585 (-)NCBIGRCm39mm39
GRCm3811106,782,693 - 106,782,759 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11106,782,693 - 106,782,759 (-)EnsemblGRCm38mm10GRCm38
Celera11118,513,904 - 118,513,970 (-)NCBICelera
Cytogenetic Map11E1NCBI
cM Map1170.02NCBI
MIR3064
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1764,500,774 - 64,500,839 (-)EnsemblGRCh38hg38GRCh38
GRCh381764,500,774 - 64,500,839 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371762,496,892 - 62,496,957 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map17q23.3NCBI
HuRef1757,945,957 - 57,946,022 (-)NCBIHuRef
CHM1_11762,560,817 - 62,560,882 (-)NCBICHM1_1

Position Markers
DDX5  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3811106,783,813 - 106,783,974UniSTSGRCm38
MGSCv3711106,645,127 - 106,645,288UniSTSGRCm37
Celera11118,515,032 - 118,515,193UniSTS
Cytogenetic Map11E2UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357859Lvrq7_mliver weight QTL 7 (mouse)Not determined1112318637118131898Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112318637118131898Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44739211113167183Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156973201114267131Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162700000109500000Mouse
1301310Tmevd5_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 5 (mouse)Not determined1172835299106835463Mouse
4142348Pstc2_mperiosteal circumference 2 (mouse)Not determined1172927789106927907Mouse
10043866Adip19_madiposity 19 (mouse)Not determined1172927789106927907Mouse
11038695Par8_mpulmonary adenoma resistance 8 (mouse)1177172953111173092Mouse
1301414Heal10_mwound healing/regeneration 10 (mouse)Not determined1177546357111546496Mouse
10045616Heal25_mwound healing/regeneration 25 (mouse)Not determined1177546357111546496Mouse
10413882Moe1_mmodifier of epilepsy 1 (mouse)1177880152111880273Mouse
1301640Lore4_mloss of righting induced by ethanol 4 (mouse)Not determined1179265183107725646Mouse
14746970Manh71_mmandible shape 71 (mouse)1179525431113525431Mouse
1300649Crhq1_mcompensatory renal hypertrophy QTL 1 (mouse)Not determined1181683655115683810Mouse
1300766Skull16_mskull morphology 16 (mouse)Not determined1181683655115683810Mouse
10412288Carg4_mCandida albicans resistance gene 4 (mouse)Not determined1181919441115919441Mouse
1301072Eae22_mexperimental allergic encephalomyelitis 22 (mouse)Not determined1182486872116486994Mouse
14747003Mancz9_mmandible centroid size 9 (mouse)1185954085119954085Mouse
15039374Adip29_madiposity 29 (mouse)1186717494120717494Mouse
15039376Bw42_mbody weight QTL 42 (mouse)1186717494120717494Mouse
15014785Mvlq1_mmacrovesicular liver lesion QTL 1 (mouse)1186717494120717494Mouse
27226789Feml16_mfemur length 16, 10 week (mouse)1187600000126900000Mouse
10044007Hbnr14_mHeligmosomoides bakeri nematode resistance 14 (mouse)Not determined1187611774121611872Mouse
11251723Ewc5_methanol withdrawal and consumption 5 (mouse)1189978425122082543Mouse
1302034Pkccl_mprotein kinase C content in lungs (mouse)Not determined1191713782122082543Mouse
1558753Ath19_matherosclerosis 19 (mouse)Not determined1191713782122082543Mouse
10045617Heal26_mwound healing/regeneration 26 (mouse)Not determined1193048547112653728Mouse
1301095El6_mepilepsy 6 (mouse)Not determined1193338357122082543Mouse
4141939Pregq2_mpregnancy QTL 2 (mouse)Not determined1194172953118131898Mouse
27226731Tibmd4_mtibia midshaft diameter 4, 10 week (mouse)1194300000119000000Mouse
4141465Dbm2_mdiabetes modifier 2 (mouse)Not determined94546357118131898Mouse
1300944Alcp20_malcohol preference locus 20 (mouse)Not determined1195513139122082543Mouse
1301958Alcp18_malcohol preference locus 18 (mouse)Not determined1195513139122082543Mouse
1300962Cd8mts4_mCD8 memory T cell subset 4 (mouse)Not determined1196246848122082543Mouse
1301535Pas5b_mpulmonary adenoma susceptibility 5b (mouse)Not determined1196285639108915558Mouse
1301057Nidd4_mnon-insulin-dependent diabetes mellitus 4 (mouse)Not determined1196919310122082543Mouse
12910539Sstapa3_msuseptibility to Staphylococcus aureus infection 3 (mouse)1197006867110713165Mouse
1301983Berr2_mberghei resistance locus 2 (mouse)Not determined1198461783122082543Mouse
10043976Obq33_mobesity QTL 33 (mouse)Not determined1198609643122082543Mouse
10044001Alcw8_malcohol withdrawal 8 (mouse)Not determined1199363361122082543Mouse
11553867Stmm5_mskin tumor modifier of MSM 5 (mouse)11100167277122082543Mouse
11341721Rvfs2_mRift Valley fever susceptibility 2 (mouse)11100363360120996339Mouse
1301012Vispl_mvisual placing (mouse)Not determined11101131764122082543Mouse
14700693Ppiq12_mprepulse inhibition QTL 12 (mouse)11101613994114581537Mouse
14700694Ppiq13_mprepulse inhibition QTL 13 (mouse)11101613994114581537Mouse
14700695Ppiq14_mprepulse inhibition QTL 14 (mouse)11101613994114581537Mouse
14700696Ppiq15_mprepulse inhibition QTL 15 (mouse)11101613994114581537Mouse
1300957Pbd1_mpeak bone density 1 (mouse)Not determined11102453297112493297Mouse
4141612Cia40_mcollagen induced arthritis 40 (mouse)Not determined11103383166115130618Mouse

miRNA Target Status

Predicted Targets
Summary Value
Count of predictions:33689
Count of gene targets:13166
Count of transcripts:23686
Interacting mature miRNAs:mmu-miR-3064-3p, mmu-miR-3064-5p
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000175532
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl11106,782,693 - 106,782,759 (-)Ensembl
RefSeq Acc Id: NR_037224
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911106,673,519 - 106,673,585 (-)NCBI
GRCm3811106,782,693 - 106,782,759 (-)ENTREZGENE
Celera11118,513,904 - 118,513,970 (-)ENTREZGENE
cM Map11 ENTREZGENE
Sequence:

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:4834237 AgrOrtholog
Ensembl Genes ENSMUSG00000093273 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000175532 ENTREZGENE
MGD MGI:4834237 ENTREZGENE
miRBase MI0014026 ENTREZGENE
NCBI Gene 100526469 ENTREZGENE
PhenoGen Mir3064 PhenoGen
RNAcentral URS000012EAC7 RNACentral
  URS000031250B RNACentral
  URS000075E6F6 RNACentral