Mir669a-5 (microRNA 669a-5) - Rat Genome Database

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Pathways
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Gene: Mir669a-5 (microRNA 669a-5) Mus musculus
Analyze
Symbol: Mir669a-5
Name: microRNA 669a-5
RGD ID: 4888676
MGI Page MGI
Description: Acts upstream of or within negative regulation of skeletal muscle cell differentiation and regulation of gene expression. Is expressed in central nervous system and dorsal root ganglion.
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Previously known as: mmu-mir-669a-5
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39210,486,572 - 10,486,658 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl210,486,572 - 10,486,658 (+)EnsemblGRCm39 Ensembl
GRCm38210,481,761 - 10,481,847 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl210,481,761 - 10,481,847 (+)EnsemblGRCm38mm10GRCm38
Celera210,422,267 - 10,422,353 (+)NCBICelera
Cytogenetic Map2A1NCBI
cM Map28.22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

References
Additional References at PubMed
PMID:16381832   PMID:20413612   PMID:20708584   PMID:21267068   PMID:21708977  


Genomics


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10045633Heal15_mwound healing/regeneration 15 (mouse)Not determined2121989642Mouse
4141836Tgq11_mtriglyceride QTL 11 (mouse)Not determined125324559Mouse
4142333Tgq10_mtriglyceride QTL 10 (mouse)Not determined125324559Mouse
1301838Sluc16_msusceptibility to lung cancer 16 (mouse)Not determined2126529589Mouse
12904743Carcdq3_mcardiac collagen deposition QTL 3 (mouse)2323494028179150Mouse
1301769Orgwq2_morgan weight QTL 2 (mouse)Not determined2388712693421651Mouse
1301980Fcsa5_mfemoral cross-sectional area 5 (mouse)Not determined2767911541679261Mouse
1301790Pcfm1_mperiosteal circumference and femur length 1 (mouse)Not determined2823629642236396Mouse
10043876Adip22_madiposity 22 (mouse)Not determined2830805142308240Mouse
1300624Insq7_minsulin QTL 7 (mouse)Not determined2938444643384575Mouse
10755513Amzn4_manatomical modifier of Zfp423 4 (mouse)2938444643384575Mouse
12903993Opfaq1_mopen field activity QTL 1 (mouse)2967669127022642Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NR_037251 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AL772216 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000197439
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl210,481,761 - 10,481,847 (+)Ensembl
RefSeq Acc Id: ENSMUST00000239940
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl210,486,572 - 10,486,658 (+)Ensembl
RefSeq Acc Id: NR_037251
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39210,486,572 - 10,486,658 (+)NCBI
GRCm38210,481,761 - 10,481,847 (+)ENTREZGENE
Celera210,422,267 - 10,422,353 (+)NCBI
cM Map2 ENTREZGENE
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000104734 Ensembl
  ENSMUSG00000119137 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000239940 ENTREZGENE
MGD MGI:4834282 ENTREZGENE
miRBase MI0014055 ENTREZGENE
NCBI Gene 100526483 ENTREZGENE
PhenoGen Mir669a-5 PhenoGen
RNAcentral URS00002AA0E2 RNACentral
  URS000061264D RNACentral
  URS000075D337 RNACentral