Mir3088 (microRNA 3088) - Rat Genome Database

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Gene: Mir3088 (microRNA 3088) Mus musculus
Analyze
Symbol: Mir3088
Name: microRNA 3088
RGD ID: 4888670
MGI Page MGI
Description: microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Previously known as: mir-3088; mmu-mir-3088
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39228,623,290 - 28,623,363 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl228,623,290 - 28,623,363 (+)EnsemblGRCm39 Ensembl
GRCm38228,733,278 - 28,733,351 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl228,733,278 - 28,733,351 (+)EnsemblGRCm38mm10GRCm38
Celera228,438,554 - 28,438,627 (+)NCBICelera
Cytogenetic Map2A3NCBI
cM Map219.38NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
glyphosate  (EXP)
streptozocin  (EXP)

References
Additional References at PubMed
PMID:16381832   PMID:20413612   PMID:21037258  


Genomics

Variants

.
Variants in Mir3088
3 total Variants
miRNA Target Status

Predicted Targets
Summary Value
Count of predictions:15529
Count of gene targets:7060
Count of transcripts:11226
Interacting mature miRNAs:mmu-miR-3088-3p, mmu-miR-3088-5p
Prediction methods:Microtar, Miranda, Pita, Pita,Targetscan, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301769Orgwq2_morgan weight QTL 2 (mouse)Not determined2388712693421651Mouse
1301980Fcsa5_mfemoral cross-sectional area 5 (mouse)Not determined2767911541679261Mouse
1301790Pcfm1_mperiosteal circumference and femur length 1 (mouse)Not determined2823629642236396Mouse
10043876Adip22_madiposity 22 (mouse)Not determined2830805142308240Mouse
1300624Insq7_minsulin QTL 7 (mouse)Not determined2938444643384575Mouse
10755513Amzn4_manatomical modifier of Zfp423 4 (mouse)2938444643384575Mouse
8552707Cia23_mcollagen induced arthritis QTL 23 (mouse)Not determined21212953766556453Mouse
1301641Sbmd2_mspinal bone mineral density 2 (mouse)Not determined21421456748214713Mouse
1357881Estoq1_membryo survival total QTL 1 (mouse)Not determined220897778118894840Mouse
1357454Kidq1_mkidney weight QTL 1 (mouse)Not determined220897778118894840Mouse
1357436Splq1_mspleen weight QTL 1 (mouse)Not determined220897778118894840Mouse
39128209Lwq14_mliver weight QTL 14 (mouse)220897778118894840Mouse
1558899Egq1_mearly growth QTL 1 (mouse)Not determined220897778118894840Mouse
1558966W10q9_mweight 10 weeks QTL 9 (mouse)Not determined220897778118894840Mouse
1558915W3q1_mweight 3 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
1558738W6q1_mweight 6 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
1357681Hrtq1_mheart weight QTL 1 (mouse)Not determined220897778118894840Mouse
1301376Etohc1_methanol consumption 1 (mouse)Not determined22112972555129871Mouse
4141708Pbwg1.2_mpostnatal body weight growth 1.2 (mouse)Not determined2112972555129871Mouse
13463470Tubisq1_mtubulointerstitial injury severity, QTL 1 (mouse)22368914557689269Mouse
1302174Dssc2_mdextran sodium sulfate induced colitis QTL2 (mouse)Not determined224224632148700377Mouse
26884438Sklq12_mskull length QTL 12, 16 week (mouse)22459001254890012Mouse
8552705Cia25_mcollagen induced arthritis 25 (mouse)Not determined22467911533523172Mouse
8552706Cia24_mcollagen induced arthritis QTL 24 (mouse)Not determined22467911533523172Mouse
12792980Fbmd1_mfemoral bone mineral density 1, females only (mouse)22503449245034492Mouse
4142130Pgis2_mproteoglycan induced spondylitis 2 (mouse)Not determined22530805156971811Mouse
12904005Cfq2_mconditioned fear QTL 2 (mouse)22702264256396228Mouse
1300577Capsq1_mcapsaicin sensitivity related QTL 1 (mouse)Not determined22760206084013384Mouse


Expression


Sequence


RefSeq Acc Id: ENSMUST00000175091
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl228,623,290 - 28,623,363 (+)Ensembl
GRCm38.p6 Ensembl228,733,278 - 28,733,351 (+)Ensembl
RefSeq Acc Id: NR_037271
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39228,623,290 - 28,623,363 (+)NCBI
GRCm38228,733,278 - 28,733,351 (+)ENTREZGENE
Celera228,438,554 - 28,438,627 (+)ENTREZGENE
cM Map2 ENTREZGENE
Sequence:
Promoters
RGD ID:6876810
Promoter ID:EPDNEW_M1856
Type:single initiation site
Name:Mir3088_1
Description:Mus musculus microRNA 3088 , microRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38228,733,243 - 28,733,303EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000092832 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000175091 ENTREZGENE
MGD MGI:4834302 ENTREZGENE
miRBase MI0014081 ENTREZGENE
NCBI Gene 100526498 ENTREZGENE
PhenoGen Mir3088 PhenoGen
RNAcentral URS000061DC04 RNACentral
  URS000075CB92 RNACentral
  URS000075D246 RNACentral