Mir3091 (microRNA 3091) - Rat Genome Database
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Gene: Mir3091 (microRNA 3091) Mus musculus
Analyze
Symbol: Mir3091
Name: microRNA 3091
RGD ID: 4888667
MGI Page MGI
Description: microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]
Type: ncrna
RefSeq Status: PROVISIONAL
Also known as: mir-3091; mmu-mir-3091
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392179,899,329 - 179,899,404 (+)NCBIGRCm39mm39
GRCm39 Ensembl2179,899,329 - 179,899,404 (+)Ensembl
GRCm382180,257,536 - 180,257,611 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2180,257,536 - 180,257,611 (+)EnsemblGRCm38mm10GRCm38
Celera2184,340,670 - 184,340,745 (+)NCBICelera
Cytogenetic Map2H4NCBI
cM Map2102.78NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:16381832   PMID:20413612   PMID:21037258  


Genomics


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301677Alcp6_malcohol preference locus 6 (mouse)Not determined2163844614182113224Mouse
1558748Vacq1_mvoluntary alcohol consumption QTL 1 (mouse)Not determined2178800545181873487Mouse
1302003Sluc17_msusceptibility to lung cancer 17 (mouse)Not determined2162791700182113224Mouse
1300867Lore2_mloss of righting induced by ethanol 2 (mouse)Not determined2144673941181254801Mouse
1300622Cfld1_mcystic fibrosis lung disease 1 (mouse)Not determined2155982127182113224Mouse
1357537Lith12_mlithogenic gene 12 (mouse)Not determined2156354671182113224Mouse
1300676Prdt2_mprion disease incubation time 2 (mouse)Not determined2164873361182113224Mouse
1300751Bdt1_mbone density traits 1 (mouse)Not determined2150146982182113224Mouse
1301019Bmd6_mbone mineral density 6 (mouse)Not determined2151936377182113224Mouse
1301348Alcp5_malcohol preference locus 5 (mouse)Not determined2163844614182113224Mouse
1301085Lrnx10_mlearning-contextual 10 (mouse)Not determined2150370301182113224Mouse
1558917Gct8_mgranulosa cell tumorigenesis 8 (mouse)Not determined2149394987182113224Mouse
4142211Nilac3_mnicotine induced locomotor activity 3 (mouse)Not determined2148822973182113224Mouse
5491196Mobq6_mmultigenic obesity QTL 6 (mouse)Not determined285893925181254801Mouse
4142450Lmr16_mleishmaniasis resistance 16 (mouse)Not determined2150370301182113224Mouse
11038701Ltpr2e_mLeishmania tropica response 2e (mouse)2150370301182113224Mouse
12790983Bwq12_mbody weight QTL 12 (mouse)2148396284182113224Mouse
14747002Mancz3_mmandible centroid size 3 (mouse)2152487900182113224Mouse

miRNA Target Status

Predicted Targets
Summary Value
Count of predictions:38449
Count of gene targets:15468
Count of transcripts:29297
Interacting mature miRNAs:mmu-miR-3091-3p, mmu-miR-3091-5p
Prediction methods:Microtar, Miranda, Pita, Pita,Targetscan, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000175086
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl2180,257,536 - 180,257,611 (+)Ensembl
RefSeq Acc Id: NR_037274
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392179,899,329 - 179,899,404 (+)NCBI
GRCm382180,257,536 - 180,257,611 (+)ENTREZGENE
Celera2184,340,670 - 184,340,745 (+)ENTREZGENE
cM Map2 ENTREZGENE
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000092827 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000175086 ENTREZGENE
MGD MGI:4834305 ENTREZGENE
miRBase MI0014084 ENTREZGENE
NCBI Gene 100526556 ENTREZGENE
PhenoGen Mir3091 PhenoGen
RNAcentral URS000029D458 RNACentral
  URS000048406E RNACentral
  URS000075A899 RNACentral