Mir374c (microRNA 374c) - Rat Genome Database
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Gene: Mir374c (microRNA 374c) Mus musculus
Analyze
Symbol: Mir374c
Name: microRNA 374c
RGD ID: 4888652
MGI Page MGI
Description: Localizes to RISC complex. Orthologous to human MIR374C (microRNA 374c).
Type: ncrna
RefSeq Status: PROVISIONAL
Also known as: mmu-mir-374c
RGD Orthologs
Human
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X102,616,691 - 102,616,739 (+)NCBIGRCm39mm39
GRCm38X103,573,085 - 103,573,133 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX103,573,085 - 103,573,133 (+)EnsemblGRCm38mm10GRCm38
CeleraX90,474,515 - 90,474,563 (+)NCBICelera
Cytogenetic MapXDNCBI
cM MapX46.22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
RISC complex  (IDA)

References
Additional References at PubMed
PMID:16381832   PMID:20413612   PMID:23185045   PMID:31422096   PMID:31756487  


Genomics

Comparative Map Data
Mir374c
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X102,616,691 - 102,616,739 (+)NCBIGRCm39mm39
GRCm38X103,573,085 - 103,573,133 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX103,573,085 - 103,573,133 (+)EnsemblGRCm38mm10GRCm38
CeleraX90,474,515 - 90,474,563 (+)NCBICelera
Cytogenetic MapXDNCBI
cM MapX46.22NCBI
MIR374C
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 EnsemblX74,218,549 - 74,218,618 (+)EnsemblGRCh38hg38GRCh38
GRCh38X74,218,549 - 74,218,618 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37X73,438,384 - 73,438,453 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic MapXq13.2NCBI
HuRefX67,074,210 - 67,074,279 (+)NCBIHuRef
CHM1_1X73,331,323 - 73,331,392 (+)NCBICHM1_1


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357433Dbts2_mdiabetes 2 (mouse)Not determinedX7360056151324042Mouse
4141630Gct6_mgranulosa cell tumorigenesis 6 (mouse)Not determined48090244130864007Mouse
13824980Ferq1_mgenetic fertility QTL 1 (mouse)X55000000150000000Mouse
4141665Mhysq2_mmale hybrid sterility QTL 2 (mouse)Not determined72410246140302463Mouse
1357500Mdmsc6_mmodifier of muscularity 6 (mouse)Not determinedX76263065110263152Mouse
11075102Modc2_mmodifier of Odc2 (mouse)X81146308115146453Mouse
4141803Lmr30_mleishmaniasis resistance 30 (mouse)Not determined86019000120019114Mouse
13208552Wght12_mweight 12 (mouse)X95000000151000000Mouse
13208556Lgth14_mbody length 14 (mouse)X95000000151000000Mouse
1357823Spha3_msperm head anomaly 3 (mouse)Not determinedX103012242163975945Mouse

miRNA Target Status

Predicted Targets
Summary Value
Count of predictions:13959
Count of gene targets:6452
Count of transcripts:10098
Interacting mature miRNAs:mmu-miR-374c-3p, mmu-miR-374c-5p
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NR_037298 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AL683845 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000197862
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 EnsemblX103,573,085 - 103,573,133 (+)Ensembl
RefSeq Acc Id: NR_037298
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X102,616,691 - 102,616,739 (+)NCBI
GRCm38X103,573,085 - 103,573,133 (+)ENTREZGENE
CeleraX90,474,515 - 90,474,563 (+)ENTREZGENE
cM MapX ENTREZGENE
Sequence:

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:4834330 AgrOrtholog
Ensembl Genes ENSMUSG00000106465 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000197862 ENTREZGENE
MGD MGI:4834330 ENTREZGENE
miRBase MI0014108 ENTREZGENE
NCBI Gene 100526513 ENTREZGENE
PhenoGen Mir374c PhenoGen
RNAcentral URS000025EE03 RNACentral
  URS0000311D77 RNACentral
  URS000075D842 RNACentral