Mir3078 (microRNA 3078) - Rat Genome Database
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Pathways
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Gene: Mir3078 (microRNA 3078) Mus musculus
Analyze
Symbol: Mir3078
Name: microRNA 3078
RGD ID: 4888647
MGI Page MGI
Description: microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]
Type: ncrna
RefSeq Status: PROVISIONAL
Also known as: mmu-mir-3078
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391464,828,634 - 64,828,720 (+)NCBIGRCm39mm39
GRCm39 Ensembl1464,828,634 - 64,828,720 (+)Ensembl
GRCm381464,591,185 - 64,591,271 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1464,591,185 - 64,591,271 (+)EnsemblGRCm38mm10GRCm38
Celera1462,355,959 - 62,356,045 (+)NCBICelera
Cytogenetic Map14D1NCBI
cM Map1433.77NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:16381832   PMID:20413612  


Genomics


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357589Kdnw2_mkidney weight 2 (mouse)Not determined1420837405121032392Mouse
1357527Epfpq1_mepididymal fat percentage QTL 1 (mouse)Not determined142101238271648361Mouse
27226774Tibl15_mtibia length 15, 10 week (mouse)143060000087700000Mouse
1300625Cosz2_mcocaine seizure 2 (mouse)Not determined143532384068548287Mouse
10043887Cia50_mcollagen induced arthritis QTL 50 (mouse)Not determined143719272871192863Mouse
4142419Tgq26_mtriglyceride QTL 26 (mouse)Not determined4009986274099862Mouse
1301777Bglq15_mbody growth late QTL 15 (mouse)Not determined144272496776725144Mouse
1301424Skull21_mskull morphology 21 (mouse)Not determined144272496776725144Mouse
1300805Mors3_mmodifier of obesity related sterility 3 (mouse)Not determined144279982176799969Mouse
4141400Nilac8_mnicotine induced locomotor activity 8 (mouse)Not determined144282839876828596Mouse
1301091Bbaa21_mB.burgdorferi-associated arthritis 21 (mouse)Not determined144282839876828596Mouse
1300605El5_mepilepsy 5 (mouse)Not determined144921797683218107Mouse
4142364Pbwg18_mpostnatal body weight growth 18 (mouse)Not determined145204453586044676Mouse
1301489Lbm10_mlean body mass 10 (mouse)Not determined145352385687524089Mouse
12880432Fgf23lq3_mFGF23 serum level QTL 3 (mouse)145370000087700000Mouse
10043889Cia52_mcollagen induced arthritis QTL 52 (mouse)Not determined145584494189845069Mouse
1301562Hwq1_mheart weight quantitative locus 1 (mouse)Not determined145630930590309501Mouse
1357565wrmod1_mwobbler modifier 1 (mouse)Not determined1457942183101622037Mouse
1300666Fembm2_mfemoral bone morphometry 2 (mouse)Not determined146216002096160240Mouse

miRNA Target Status

Predicted Targets
Summary Value
Count of predictions:39371
Count of gene targets:15511
Count of transcripts:29334
Interacting mature miRNAs:mmu-miR-3078-3p, mmu-miR-3078-5p
Prediction methods:Microtar, Miranda, Pita, Pita,Targetscan, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NR_037239 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC134898 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000175231
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1464,591,185 - 64,591,271 (+)Ensembl
RefSeq Acc Id: NR_037239
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391464,828,634 - 64,828,720 (+)NCBI
GRCm381464,591,185 - 64,591,271 (+)ENTREZGENE
Celera1462,355,959 - 62,356,045 (+)ENTREZGENE
cM Map14 ENTREZGENE
Sequence:
Promoters
RGD ID:8682742
Promoter ID:EPDNEW_M19402
Type:single initiation site
Name:Mir3078_1
Description:Mus musculus microRNA 3078 , microRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381464,591,102 - 64,591,162EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000092972 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000175231 ENTREZGENE
MGD MGI:4834251 ENTREZGENE
miRBase MI0014041 ENTREZGENE
NCBI Gene 100526520 ENTREZGENE
PhenoGen Mir3078 PhenoGen
RNAcentral URS000011F637 RNACentral
  URS00004AE74A RNACentral
  URS000075E033 RNACentral