Mir1199 (microRNA 1199) - Rat Genome Database

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Gene: Mir1199 (microRNA 1199) Mus musculus
Analyze
Symbol: Mir1199
Name: microRNA 1199
RGD ID: 4829253
MGI Page MGI
Description: Orthologous to human MIR1199 (microRNA 1199).
Type: ncrna
RefSeq Status: PROVISIONAL
Also known as: mir-1199; Mirn1; Mirn1199; mmu-mir-1199
RGD Orthologs
Human
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39884,738,144 - 84,738,262 (-)NCBIGRCm39mm39
GRCm39 Ensembl884,738,144 - 84,738,262 (-)Ensembl
GRCm38884,011,515 - 84,011,633 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl884,011,515 - 84,011,633 (-)EnsemblGRCm38mm10GRCm38
Celera888,304,650 - 88,304,768 (-)NCBICelera
Cytogenetic Map8C2NCBI
cM Map840.24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:16381832   PMID:17989215   PMID:20413612   PMID:21037258   PMID:29079737  


Genomics

Comparative Map Data
Mir1199
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39884,738,144 - 84,738,262 (-)NCBIGRCm39mm39
GRCm39 Ensembl884,738,144 - 84,738,262 (-)Ensembl
GRCm38884,011,515 - 84,011,633 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl884,011,515 - 84,011,633 (-)EnsemblGRCm38mm10GRCm38
Celera888,304,650 - 88,304,768 (-)NCBICelera
Cytogenetic Map8C2NCBI
cM Map840.24NCBI
MIR1199
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1914,073,361 - 14,073,479 (+)EnsemblGRCh38hg38GRCh38
GRCh381914,073,361 - 14,073,479 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371914,184,173 - 14,184,291 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map19p13.12NCBI
HuRef1913,755,831 - 13,755,949 (+)NCBIHuRef
CHM1_11914,184,744 - 14,184,862 (+)NCBICHM1_1


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4140967Bmd39_mbone mineral density 39 (mouse)Not determined832016544117238700Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined834642776114837007Mouse
1301013Capsq4_mcapsaicin sensitivity related QTL 4 (mouse)Not determined83616300092728652Mouse
27226754Femd6_mfemur midshaft diameter 6, 10 week (mouse)837400000109600000Mouse
12904744Carcdq1_mcardiac collagen deposition QTL 1 (mouse)83970925694689598Mouse
14746987Manh64_mmandible shape 64 (mouse)85005330684053306Mouse
14747005Mancz7_mmandible centroid size 7 (mouse)85005330684053306Mouse
14700686Civq3_mcerebral infarct volume QTL 3 (mouse)85188219185882191Mouse
1301506Aevm1_mautoimmune extremity vasculitis in MRL mice 1 (mouse)Not determined85428781788287993Mouse
1301952Im3_mimmunoregulatory 3 (mouse)Not determined85470661488706763Mouse
10412287Carg3_mCandida albicans resistance gene 3 (mouse)Not determined85554502889545028Mouse
11353828Gf7_mgonadal fat pad weight 7 (mouse)85820147992201479Mouse
10043975Obq31_mobesity QTL 31 (mouse)Not determined85840977692409776Mouse
1301688Orch6_mautoimmune orchitis resistance 6 (mouse)Not determined86078685094786976Mouse
4141285Tgq18_mtriglyceride QTL 18 (mouse)Not determined6346010797460107Mouse
4141797Skmw16_mskeletal muscle weight 16 (mouse)Not determined86393954797939696Mouse
1357787Vtbt5_mvertebral trabecular bone trait 5 (mouse)Not determined86535776899357920Mouse
10043992Hbnr11_mHeligmosomoides bakeri nematode resistance 11 (mouse)Not determined86560020799600347Mouse
1301767Fcsa2_mfemoral cross-sectional area 2 (mouse)Not determined870305375104305495Mouse
4142283Imraq2_mimmune response to AAV2 QTL 2 (mouse)Not determined870305375104305495Mouse
1558780Idd22_minsulin dependent diabetes susceptibility 22 (mouse)Not determined871102903105103009Mouse
4141395Char2a_mP. chabaudi malaria resistance QTL 2a (mouse)Not determined7113678390202598Mouse
4142023W3q5_mweight 3 weeks QTL 5 (mouse)Not determined71287817123895615Mouse
1357708Orq1_movulation rate QTL 1 (mouse)Not determined871287817123895615Mouse
1301872Cd4ts3_mCD4 T cell subset 3 (mouse)Not determined871396181105396393Mouse
1300920Pitm3_mprion incubation time 3 (mouse)Not determined873202495107202598Mouse
27095912Pglq14_mpelvic girdle length QTL 14, 16 week (mouse)873400000126100000Mouse
1558890Lith18_mlithogenic gene 18 (mouse)Not determined875675517109675623Mouse
1357470Obq16_mobesity QTL 16 (mouse)Not determined875685348109685497Mouse
1301808Nhdlq1_mnon-HDL QTL 1 (mouse)Not determined875685348109685497Mouse
1301874Hdlq16_mHDL QTL 16 (mouse)Not determined875685348109685497Mouse
10412234Nhdlq14_mnon-HDL QTL 14 (mouse)Not determined875685348109685497Mouse
1301099Cbm2_mcerebellum weight 2 (mouse)Not determined878518613112518703Mouse
1301581Char2_mP. chabaudi malaria resistance QTL 2 (mouse)Not determined879082178113082403Mouse
12904012Cfq10_mconditioned fear QTL 10 (mouse)88006677589014359Mouse
10755530Wbc2_mwhite blood cell count 2 (mouse)881092664115092664Mouse
10755519Wbc1_mwhite blood cell count 1 (mouse)881619151115619151Mouse

miRNA Target Status

Predicted Targets
Summary Value
Count of predictions:20230
Count of gene targets:10340
Count of transcripts:17748
Interacting mature miRNAs:mmu-miR-1199-3p, mmu-miR-1199-5p
Prediction methods:Microtar, Miranda, Pita, Pita,Targetscan, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000117015
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl884,738,144 - 84,738,262 (-)Ensembl
GRCm38.p6 Ensembl884,011,515 - 84,011,633 (-)Ensembl
RefSeq Acc Id: NR_035431
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39884,738,144 - 84,738,262 (-)NCBI
GRCm38884,011,515 - 84,011,633 (-)ENTREZGENE
Celera888,304,650 - 88,304,768 (-)ENTREZGENE
cM Map8 ENTREZGENE
Sequence:
Promoters
RGD ID:8667633
Promoter ID:EPDNEW_M11848
Type:single initiation site
Name:Mir1199_1
Description:Mus musculus microRNA 1199 , microRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38884,011,579 - 84,011,639EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3783372 AgrOrtholog
Ensembl Genes ENSMUSG00000080665 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000117015 ENTREZGENE
MGD MGI:3783372 ENTREZGENE
miRBase MI0006307 ENTREZGENE
NCBI Gene 100316677 ENTREZGENE
PhenoGen Mir1199 PhenoGen
RNAcentral URS00005374D8 RNACentral
  URS000075AA93 RNACentral
  URS000075DC4E RNACentral