Mir1967 (microRNA 1967) - Rat Genome Database

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Gene: Mir1967 (microRNA 1967) Mus musculus
Analyze
Symbol: Mir1967
Name: microRNA 1967
RGD ID: 4819516
MGI Page MGI
Description: microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Previously known as: mir-1967; mmu-mir-1967
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398124,749,380 - 124,749,461 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8124,749,380 - 124,749,461 (+)EnsemblGRCm39 Ensembl
GRCm388124,022,641 - 124,022,722 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8124,022,641 - 124,022,722 (+)EnsemblGRCm38mm10GRCm38
Celera8128,303,362 - 128,303,443 (+)NCBICelera
Cytogenetic Map8E2NCBI
cM Map872.33NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:16381832   PMID:18849523   PMID:21037258  


Genomics

Variants

.
Variants in Mir1967
4 total Variants
miRNA Target Status

Predicted Targets
Summary Value
Count of predictions:11505
Count of gene targets:5797
Count of transcripts:8955
Interacting mature miRNAs:mmu-miR-1967
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27095912Pglq14_mpelvic girdle length QTL 14, 16 week (mouse)874126628126826739Mouse
27226796Scvln16_msacral vertebrae length 2, 16 week (mouse)889726628130027694Mouse
1357494Obsty2_mobesity 2 (mouse)Not determined896245241129745061Mouse
12880431Fgf23lq2_mFGF23 serum level QTL 2 (mouse)897626632130127694Mouse
11252141Fdr2_mfat response to dietary restriction 2 (mouse)898390634130127694Mouse
1301481Lith11_mlithogenic gene 11 (mouse)Not determined898563635130127694Mouse
1302105Im1_mImmunoregulatory 1 (mouse)Not determined899828531130127694Mouse
1301080Sluc9_msusceptibility to lung cancer 9 (mouse)Not determined899828531130127694Mouse
4141435Fbtq3_mfemoral bone trait QTL 3 (mouse)Not determined8100965309130127694Mouse
1301316Dntcs1_mdental caries susceptibility 1 (mouse)Not determined8103443553127781786Mouse
11532691Sluc38_msusceptibility to lung cancer 38 (mouse)8105033977130127694Mouse
11532692Sluc38a_msusceptibility to lung cancer 38a (mouse)8105033977130127694Mouse
14746994Manh65_mmandible shape 65 (mouse)8106489629130127694Mouse
10412273Fcd1_mfunctional capillary density 1 (mouse)Not determined8110415083130127694Mouse
10412274Leci1_mleukocyte endothelial cell interactions 1 (mouse)Not determined8110415083130127694Mouse
12904938Edlmmq7_mextensor digitorum longus muscle mass QTL 7 (mouse)8111481497130127694Mouse
12904960Gmmq6_mgastrocnemius muscle mass QTL 6 (mouse)8111481497130127694Mouse
4141546Mrdq3_mmodifier of retinal degeneration QTL 3 (mouse)Not determined114439420126055880Mouse
26884375Skwq2_mskull length QTL 2, 5 week (mouse)8120726739130027694Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000157789
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl8124,749,380 - 124,749,461 (+)Ensembl
GRCm38.p6 Ensembl8124,022,641 - 124,022,722 (+)Ensembl
RefSeq Acc Id: NR_035493
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm398124,749,380 - 124,749,461 (+)NCBI
GRCm388124,022,641 - 124,022,722 (+)ENTREZGENE
Celera8128,303,362 - 128,303,443 (+)ENTREZGENE
cM Map8 ENTREZGENE
Sequence:
Promoters
RGD ID:8668619
Promoter ID:EPDNEW_M12341
Type:multiple initiation site
Name:Mir1967_1
Description:Mus musculus microRNA 1967 , microRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm388124,022,567 - 124,022,627EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000088414 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000157789 ENTREZGENE
MGD MGI:3837213 ENTREZGENE
miRBase MI0009964 ENTREZGENE
NCBI Gene 100316819 ENTREZGENE
PhenoGen Mir1967 PhenoGen
RNAcentral URS0000223421 RNACentral
  URS000075BA58 RNACentral