Mir1892 (microRNA 1892) - Rat Genome Database
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Gene: Mir1892 (microRNA 1892) Mus musculus
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Symbol: Mir1892
Name: microRNA 1892
RGD ID: 4810014
MGI Page MGI
Description: microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]
Type: ncrna
RefSeq Status: PROVISIONAL
Also known as: mir-1892; Mirn1; Mirn1892; mmu-mir-1892
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391254,692,718 - 54,692,797 (-)NCBIGRCm39mm39
GRCm381254,645,933 - 54,646,012 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1254,645,933 - 54,646,012 (-)EnsemblGRCm38mm10GRCm38
Celera1255,962,510 - 55,962,589 (-)NCBICelera
Cytogenetic Map12C1NCBI
cM Map1223.46NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:16381832   PMID:18492288   PMID:21037258   PMID:21822254  


Genomics

Position Markers
D17995  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381254,645,481 - 54,645,594UniSTSGRCm38
MGSCv371255,746,468 - 55,746,581UniSTSGRCm37
Celera1255,962,058 - 55,962,171UniSTS
Cytogenetic Map12C1UniSTS
Whitehead_YAC12 UniSTS
RH124648  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381254,645,526 - 54,645,643UniSTSGRCm38
MGSCv371255,746,513 - 55,746,630UniSTSGRCm37
Celera1255,962,103 - 55,962,220UniSTS
Cytogenetic Map12C1UniSTS
RH125747  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381254,645,452 - 54,645,701UniSTSGRCm38
MGSCv371255,746,439 - 55,746,688UniSTSGRCm37
Celera1255,962,029 - 55,962,278UniSTS
Cytogenetic Map12C1UniSTS
Whitehead/MRC_RH12554.13UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142234Tmc1m3_mTmc1 modifier 3 (mouse)Not determined12536844076984429Mouse
27226753Femd7_mfemur midshaft diameter 7, 10 week (mouse)12950000084100000Mouse
13207568Tcq14_mtotal cholesterol QTL 14 (mouse)121161000097210000Mouse
1558978Cplaq10_mcircadian period of locomotor activity 10 (mouse)Not determined121529102578993590Mouse
1301574Lmblgq5_mlimb length QTL 5 (mouse)Not determined121754644680910109Mouse
1302172Skts5_mskin tumor susceptibility 5 (mouse)Not determined122209886756099017Mouse
1300636Gct2_mgranulosa cell tumorigenesis 2 (mouse)Not determined122911390263114101Mouse
1301989Hdlq18_mHDL QTL 18 (mouse)Not determined122911390263114101Mouse
4141843Moen3_mmodifier of engrailed QTL 3 (mouse)Not determined122975480163754950Mouse
14747008Mancz10_mmandible centroid size 10 (mouse)122981673963816739Mouse
10402492Dipa8_mdrug induced psychomotor activation 8 (mouse)Not determined123488708968887236Mouse
1300818Bbaa10_mB.burgdorferi-associated arthritis 10 (mouse)Not determined123504100565464245Mouse
4142002Tbqt3_mtibia bone quality traits 3 (mouse)Not determined1235235497109969809Mouse
1357479Splwt1_mspleen weight 1 (mouse)Not determined124164639290920752Mouse
1357757Lnopy2_mlens opacity 2 (mouse)Not determined125279985286800022Mouse
1357749Vtbt13_mvertebral trabecular bone trait 13 (mouse)Not determined125308522887085371Mouse
12904004Opfaq11_mopen field activity QTL 11 (mouse)125310884157229970Mouse

miRNA Target Status

Predicted Targets
Summary Value
Count of predictions:38033
Count of gene targets:11924
Count of transcripts:21155
Interacting mature miRNAs:mmu-miR-1892
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000197752
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1254,645,933 - 54,646,012 (-)Ensembl
RefSeq Acc Id: NR_035439
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391254,692,718 - 54,692,797 (-)NCBI
GRCm381254,645,933 - 54,646,012 (-)ENTREZGENE
Celera1255,962,510 - 55,962,589 (-)ENTREZGENE
cM Map12 ENTREZGENE
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000106344 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000197752 ENTREZGENE
MGD MGI:3811416 ENTREZGENE
miRBase MI0008320 ENTREZGENE
NCBI Gene 100316682 ENTREZGENE
PhenoGen Mir1892 PhenoGen
RNAcentral URS0000033A70 RNACentral
  URS000075D9EA RNACentral