Mir1224 (microRNA 1224) - Rat Genome Database
Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: Mir1224 (microRNA 1224) Mus musculus
Analyze
Symbol: Mir1224
Name: microRNA 1224
RGD ID: 4805279
MGI Page MGI
Description: Involved in cellular response to amino acid stimulus; cellular response to forskolin; and cellular response to inorganic substance. Orthologous to human MIR1224 (microRNA 1224).
Type: ncrna
RefSeq Status: PROVISIONAL
Also known as: mir-1224; Mirn1; Mirn1224; mmu-mir-1224
RGD Orthologs
Human
Rat
Pig
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391620,423,202 - 20,423,286 (+)NCBIGRCm39mm39
GRCm381620,604,452 - 20,604,536 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1620,604,452 - 20,604,536 (+)EnsemblGRCm38mm10GRCm38
Celera1621,168,528 - 21,168,612 (+)NCBICelera
Cytogenetic Map16A3NCBI
cM Map1612.48NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

References

Additional References at PubMed
PMID:16381832   PMID:16954537   PMID:17964270   PMID:20215419   PMID:20413612   PMID:20548288   PMID:20589883   PMID:21037258   PMID:21267068   PMID:21320120   PMID:21822254   PMID:21993888  
PMID:29474539   PMID:30632458  


Genomics

Comparative Map Data
Mir1224
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391620,423,202 - 20,423,286 (+)NCBIGRCm39mm39
GRCm381620,604,452 - 20,604,536 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1620,604,452 - 20,604,536 (+)EnsemblGRCm38mm10GRCm38
Celera1621,168,528 - 21,168,612 (+)NCBICelera
Cytogenetic Map16A3NCBI
cM Map1612.48NCBI
MIR1224
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl3184,241,405 - 184,241,489 (+)EnsemblGRCh38hg38GRCh38
GRCh383184,241,405 - 184,241,489 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh373183,959,193 - 183,959,277 (+)NCBIGRCh37GRCh37hg19GRCh37
Celera3182,399,957 - 182,400,041 (+)NCBI
Cytogenetic Map3q27.1NCBI
HuRef3181,366,162 - 181,366,246 (+)NCBIHuRef
CHM1_13183,923,615 - 183,923,699 (+)NCBICHM1_1
Mir1224
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21180,306,902 - 80,306,986 (-)NCBI
Rnor_6.0 Ensembl1183,992,628 - 83,992,712 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01183,992,628 - 83,992,712 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01187,064,950 - 87,065,034 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1179,146,571 - 79,146,655 (-)NCBICelera
Cytogenetic Map11q23NCBI
MIR1224
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13122,141,042 - 122,141,149 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113122,141,042 - 122,141,149 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213131,580,811 - 131,580,918 (+)NCBISscrofa10.2Sscrofa10.2susScr3


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4141060Pbwg19_mpostnatal body weight growth 19 (mouse)Not determined16120963024Mouse
1300632Loca2_mlocomotor activity 2 (mouse)Not determined16122682710Mouse
10043879Adip25_madiposity 25 (mouse)Not determined16122702454Mouse
1301575Tanidd3_mtally ho associated non-insulin dependednt diabetes mellitus 3 (mouse)Not determined16123079875Mouse
1301970Heal11_mwound healing/regeneration 11 (mouse)Not determined16124445989Mouse
4141468Nhdlq10_mnon-HDL QTL 10 (mouse)Not determined16124445989Mouse
1301384Dice1_mdetermination of interleukin 4 commitment 1 (mouse)Not determined16128616494Mouse
10402497Lmr23_mleishmaniasis resistance 23 (mouse)Not determined16129856336Mouse
1301559Bbaa19_mB.burgdorferi-associated arthritis 19 (mouse)Not determined16130249113Mouse
10412289Ppsl_mplasma P-selectin levels (mouse)Not determined16130996708Mouse
27095908Scvln7_msacral vertebrae length 2, 5 week (mouse)16350000040000000Mouse
27226768Tibl9_mtibia length 9, 5 week (mouse)16350000051600000Mouse
27226785Feml12_mfemur length 12, 5 week (mouse)16350000064800000Mouse
26884432Zlq7_mzygomatic length QTL 7, 10 week (mouse)16400000064800000Mouse
38501069Tip4_mtuberculosis immunophenotype 4, IFN-g level (mouse)16450000044700000Mouse
1301443Mopkd2_mmodifier of polycystic kidney disease progression 2 (mouse)Not determined16482756438827664Mouse
1300656Bgeq15_mbody growth early QTL 15 (mouse)Not determined16595650239956690Mouse
1301945Skl7_mskeletal size (tail length) 7 (mouse)Not determined16595650239956690Mouse
1300987Skull23_mskull morphology 23 (mouse)Not determined16595650239956690Mouse
1300943Skts9_mskin tumor susceptibility 9 (mouse)Not determined16595650239956690Mouse
4141010Bbq1_mbrain and behavior QTL 1 (mouse)Not determined16665914535200846Mouse
1357763Lp1_mlymphocyte proliferation 1 (mouse)Not determined16672511565669666Mouse
4142460Nilac10_mnicotine induced locomotor activity 10 (mouse)Not determined16731904229406653Mouse
11251724Ewc6_methanol withdrawal and consumption 6 (mouse)16840730242407302Mouse
26884376Skwq4_mskull length QTL 4, 5 week (mouse)16860000091100000Mouse
10043978Obq35_mobesity QTL 35 (mouse)Not determined161006288144062881Mouse
1301086Lprm5_mlymphoproliferation modifier 5 (mouse)Not determined161203007246030171Mouse
1301841Lrnx9_mlearning-contextual 9 (mouse)Not determined161240654246406653Mouse
10045614Rapop6_mradiation-induced apoptosis 6 (mouse)Not determined161498410348984214Mouse
4142236Pstc4_mperiosteal circumference 4 (mouse)Not determined161570409149704294Mouse
1357517Bwtn1_mbody weight at necropsy 1 (mouse)Not determined162020057985803938Mouse

miRNA Target Status

Predicted Targets
Summary Value
Count of predictions:30686
Count of gene targets:11516
Count of transcripts:20190
Interacting mature miRNAs:mmu-miR-1224-3p, mmu-miR-1224-5p
Prediction methods:Microtar, Miranda, Pita, Pita,Targetscan, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000117019
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1620,604,452 - 20,604,536 (+)Ensembl
RefSeq Acc Id: NR_035407
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391620,423,202 - 20,423,286 (+)NCBI
GRCm381620,604,452 - 20,604,536 (+)ENTREZGENE
Celera1621,168,528 - 21,168,612 (+)ENTREZGENE
cM Map16 ENTREZGENE
Sequence:
Promoters
RGD ID:8685750
Promoter ID:EPDNEW_M20906
Type:single initiation site
Name:Mir1224_1
Description:Mus musculus microRNA 1224 , microRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381620,604,378 - 20,604,438EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3764925 AgrOrtholog
Ensembl Genes ENSMUSG00000080669 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000117019 ENTREZGENE
MGD MGI:3764925 ENTREZGENE
miRBase MI0004118 ENTREZGENE
NCBI Gene 100316739 ENTREZGENE
PhenoGen Mir1224 PhenoGen
RNAcentral URS0000224406 RNACentral
  URS0000628581 RNACentral
  URS000075E6D3 RNACentral