Mir1198 (microRNA 1198) - Rat Genome Database

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Gene: Mir1198 (microRNA 1198) Mus musculus
Analyze
Symbol: Mir1198
Name: microRNA 1198
RGD ID: 4802250
MGI Page MGI
Description: Acts upstream of or within cellular response to forskolin and cellular response to inorganic substance. Is expressed in lens.
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Previously known as: Mirn1; Mirn1198; mmu-mir-1198
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X7,673,340 - 7,673,460 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX7,673,340 - 7,673,460 (+)EnsemblGRCm39 Ensembl
GRCm38X7,807,101 - 7,807,221 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX7,807,101 - 7,807,221 (+)EnsemblGRCm38mm10GRCm38
CeleraX3,663,470 - 3,663,590 (-)NCBICelera
Cytogenetic MapXA1.1NCBI
cM MapX3.52NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

References
Additional References at PubMed
PMID:16381832   PMID:17989215   PMID:20215419   PMID:20413612   PMID:21822254   PMID:21993888   PMID:33665188  


Genomics

Variants

.
Variants in Mir1198
2 total Variants
miRNA Target Status

Predicted Targets
Summary Value
Count of predictions:20714
Count of gene targets:9435
Count of transcripts:15309
Interacting mature miRNAs:mmu-miR-1198-3p, mmu-miR-1198-5p
Prediction methods:Microtar, Miranda, Pita, Pita,Targetscan, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1302195Pbwg10_mpostnatal body weight growth 10 (mouse)Not determinedX126202173Mouse
1357433Dbts2_mdiabetes 2 (mouse)Not determinedX7226295150107038Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NR_035430 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AL671995 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000116995
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX7,673,340 - 7,673,460 (+)Ensembl
GRCm38.p6 EnsemblX7,807,101 - 7,807,221 (+)Ensembl
RefSeq Acc Id: NR_035430
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X7,673,340 - 7,673,460 (+)NCBI
GRCm38X7,807,101 - 7,807,221 (+)ENTREZGENE
CeleraX3,663,470 - 3,663,590 (-)ENTREZGENE
cM MapX ENTREZGENE
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000080645 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000116995 ENTREZGENE
MGD MGI:3783371 ENTREZGENE
miRBase MI0006306 ENTREZGENE
NCBI Gene 100316807 ENTREZGENE
PhenoGen Mir1198 PhenoGen
RNAcentral URS0000456F20 RNACentral
  URS000058C0BE RNACentral
  URS000075C217 RNACentral