Mir1968 (microRNA 1968) - Rat Genome Database
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Pathways
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Gene: Mir1968 (microRNA 1968) Mus musculus
Analyze
Symbol: Mir1968
Name: microRNA 1968
RGD ID: 4797159
MGI Page MGI
Description: microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]
Type: ncrna
RefSeq Status: PROVISIONAL
Also known as: mir-1968; mmu-mir-1968
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39813,239,031 - 13,239,098 (-)NCBIGRCm39mm39
GRCm39 Ensembl813,239,031 - 13,239,098 (-)Ensembl
GRCm38813,189,031 - 13,189,098 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl813,189,031 - 13,189,098 (-)EnsemblGRCm38mm10GRCm38
Celera813,357,351 - 13,357,418 (-)NCBICelera
Cytogenetic Map8A1.1NCBI
cM Map85.73NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:16381832   PMID:18849523   PMID:20413612   PMID:21037258  


Genomics


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13432571Scvg1_msubcutaneous vessel growth QTL 1 (mouse)8124701082Mouse
11533914Mts5_mmammary tumor susceptibility 5 (mouse)8130397432Mouse
4140978Nilac5_mnicotine induced locomotor activity 5 (mouse)Not determined8131723288Mouse
27226756Femd2_mfemur midshaft diameter 2, 5 week (mouse)8490000034600000Mouse
1357525Pnhdlc3_mplasma non-HDL cholesterol 3 (mouse)Not determined8716249923263799Mouse
1301532Scc8_mcolon tumor susceptibility 8 (mouse)Not determined8716249934642953Mouse
1300906Ap8q_malcohol preference 8 QTL (mouse)Not determined8749417341494326Mouse
1301128Sluc20_msusceptibility to lung cancer 20 (mouse)Not determined8761318541613356Mouse
1301929Eae24_msusceptibility to experimental allergic encephalomyelitis 24 (mouse)Not determined8761318541613356Mouse
10412209Cypr7_mcytokine production 7 (mouse)Not determined8761318541613356Mouse
14697703Stsl1_mSalmonella typhimurium susceptibility locus 1 (mouse)81130000017000000Mouse

miRNA Target Status

Predicted Targets
Summary Value
Count of predictions:36300
Count of gene targets:13188
Count of transcripts:24502
Interacting mature miRNAs:mmu-miR-1968-3p, mmu-miR-1968-5p
Prediction methods:Microtar, Miranda, Pita, Pita,Targetscan, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000157429
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl813,189,031 - 13,189,098 (-)Ensembl
RefSeq Acc Id: NR_035494
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39813,239,031 - 13,239,098 (-)NCBI
GRCm38813,189,031 - 13,189,098 (-)ENTREZGENE
Celera813,357,351 - 13,357,418 (-)ENTREZGENE
cM Map8 ENTREZGENE
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000088054 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000157429 ENTREZGENE
MGD MGI:3837215 ENTREZGENE
miRBase MI0009965 ENTREZGENE
NCBI Gene 100316713 ENTREZGENE
PhenoGen Mir1968 PhenoGen
RNAcentral URS0000570FEF RNACentral
  URS000075D565 RNACentral
  URS000075E4D5 RNACentral