WASIR1 (WASH and IL9R antisense RNA 1) - Rat Genome Database

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Gene: WASIR1 (WASH and IL9R antisense RNA 1) Homo sapiens
Analyze
Symbol: WASIR1
Name: WASH and IL9R antisense RNA 1
RGD ID: 4140866
HGNC Page HGNC
Description: ASSOCIATED WITH autistic disorder; Schizophrenia
Type: ncrna
RefSeq Status: VALIDATED
Also known as: hCG_1742852; NCRNA00286B; non-protein coding RNA 286B
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 EnsemblX156,014,623 - 156,016,837 (-)EnsemblGRCh38hg38GRCh38
GRCh38X156,014,564 - 156,016,830 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38Y57,201,084 - 57,203,350 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37Y59,347,235 - 59,349,501 (-)NCBIGRCh37GRCh37hg19GRCh37
GRCh37X155,244,229 - 155,246,495 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X154,897,479 - 154,899,770 (-)NCBINCBI36hg18NCBI36
CeleraX155,400,938 - 155,403,224 (-)NCBI
Cytogenetic MapXq28 and Yq12NCBI
HuRefX143,727,527 - 143,729,503 (-)NCBIHuRef
CHM1_1X155,155,895 - 155,158,343 (-)NCBICHM1_1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
Schizophrenia  (IAGP)
References
Additional References at PubMed
PMID:11181995  


Genomics

Position Markers
ECD08574  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37X155,246,045 - 155,246,696UniSTSGRCh37
GRCh37Y59,349,051 - 59,349,702UniSTSGRCh37
GRCh371672,716 - 73,367UniSTSGRCh37
Build 36X154,899,239 - 154,899,890RGDNCBI36
CeleraX155,402,693 - 155,403,344RGD
Cytogenetic Map16p13.3UniSTS
Cytogenetic MapYq12UniSTS
Cytogenetic MapXq28UniSTS
HuRefX143,728,972 - 143,729,623UniSTS
ECD16799  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37X155,244,976 - 155,245,401UniSTSGRCh37
GRCh37Y59,347,982 - 59,348,407UniSTSGRCh37
GRCh371674,010 - 74,435UniSTSGRCh37
Build 36X154,898,170 - 154,898,595RGDNCBI36
CeleraX155,401,630 - 155,402,055RGD
Cytogenetic Map16p13.3UniSTS
Cytogenetic MapYq12UniSTS
Cytogenetic MapXq28UniSTS
HuRefX143,727,901 - 143,728,326UniSTS
ECD20488  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37X155,244,176 - 155,244,458UniSTSGRCh37
GRCh37Y59,347,182 - 59,347,464UniSTSGRCh37
GRCh371674,953 - 75,235UniSTSGRCh37
Build 36X154,897,370 - 154,897,652RGDNCBI36
CeleraX155,400,830 - 155,401,112RGD
Cytogenetic Map16p13.3UniSTS
Cytogenetic MapYq12UniSTS
Cytogenetic MapXq28UniSTS
HuRefX143,727,101 - 143,727,383UniSTS
REN94418  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371673,597 - 73,849UniSTSGRCh37
Build 361613,597 - 13,849RGDNCBI36
CeleraX155,402,216 - 155,402,468RGD
Cytogenetic MapYq12UniSTS
Cytogenetic Map19p13.3UniSTS
Cytogenetic Map16p13.3UniSTS
Cytogenetic MapXq28UniSTS
HuRefX143,728,486 - 143,728,738UniSTS
stSG608809  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37X155,246,659 - 155,247,007UniSTSGRCh37
GRCh37Y59,349,665 - 59,350,013UniSTSGRCh37
GRCh371672,405 - 72,753UniSTSGRCh37
Build 36X154,899,853 - 154,900,201RGDNCBI36
CeleraX155,403,307 - 155,403,655RGD
Cytogenetic Map16p13.3UniSTS
Cytogenetic MapYq12UniSTS
Cytogenetic MapXq28UniSTS
HuRefX143,729,586 - 143,729,934UniSTS
stSG608810  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37X155,245,371 - 155,246,650UniSTSGRCh37
GRCh37Y59,348,377 - 59,349,656UniSTSGRCh37
GRCh371672,762 - 74,040UniSTSGRCh37
Build 36X154,898,565 - 154,899,844RGDNCBI36
CeleraX155,402,025 - 155,403,298RGD
Cytogenetic Map16p13.3UniSTS
Cytogenetic MapYq12UniSTS
Cytogenetic MapXq28UniSTS
HuRefX143,728,296 - 143,729,577UniSTS
stSG608811  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37X155,244,176 - 155,245,390UniSTSGRCh37
GRCh37Y59,347,182 - 59,348,396UniSTSGRCh37
GRCh371674,021 - 75,235UniSTSGRCh37
Build 36X154,897,370 - 154,898,584RGDNCBI36
CeleraX155,400,830 - 155,402,044RGD
Cytogenetic Map16p13.3UniSTS
Cytogenetic MapYq12UniSTS
Cytogenetic MapXq28UniSTS
HuRefX143,727,101 - 143,728,315UniSTS

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:95
Count of miRNA genes:89
Interacting mature miRNAs:90
Transcripts:ENST00000399966
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 2
Low 11 6 28 6 3 28 15 143 39
Below cutoff 546 210 261 58 340 42 509 268 1191 103 535 464 21 125 229 2

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000399966
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 EnsemblX156,014,623 - 156,016,837 (-)Ensembl
RefSeq Acc Id: NR_138048
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38Y57,201,084 - 57,203,350 (-)NCBI
GRCh38X156,014,564 - 156,016,830 (-)NCBI
Sequence:
Protein Sequences
GenBank Protein EAW55887 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences

Promoters
RGD ID:15097488
Promoter ID:EPDNEWNC_H2328
Type:initiation region
Name:WASIR1_1
Description:WASH and IL9R antisense RNA 1 [Source:HGNCSymbol;Acc:HGNC:38513]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38X156,016,836 - 156,016,896EPDNEWNC

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 Xq28(chrX:152932818-156022206)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052490]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052490]|See cases [RCV000052490] ChrX:152932818..156022206 [GRCh38]
ChrX:152173071..155251871 [GRCh37]
ChrX:151852018..154905065 [NCBI36]
ChrX:Xq28
pathogenic
GRCh38/hg38 Xq23-28(chrX:115417992-156022206)x1 copy number loss See cases [RCV000051160] ChrX:115417992..156022206 [GRCh38]
ChrX:114652461..155251871 [GRCh37]
ChrX:114558717..154905065 [NCBI36]
ChrX:Xq23-28
pathogenic
GRCh38/hg38 Xq28(chrX:156001591-156022206)x1 copy number loss See cases [RCV000050305] ChrX:156001591..156022206 [GRCh38]
ChrX:155231256..155251871 [GRCh37]
ChrX:154884450..154905065 [NCBI36]
ChrX:Xq28
benign
GRCh38/hg38 Xq28(chrX:156001591-156022206)x0 copy number loss See cases [RCV000050306] ChrX:156001591..156022206 [GRCh38]
ChrX:155231256..155251871 [GRCh37]
ChrX:154884450..154905065 [NCBI36]
ChrX:Xq28
benign
GRCh38/hg38 Yq11.222-12(chrY:18891467-57208726)x0 copy number loss See cases [RCV000050370] ChrY:18891467..57208726 [GRCh38]
ChrY:21053353..59354877 [GRCh37]
ChrY:19512741..57764265 [NCBI36]
ChrY:Yq11.222-12
pathogenic
GRCh38/hg38 Xq28(chrX:149989929-156022206)x3 copy number gain See cases [RCV000050657] ChrX:149989929..156022206 [GRCh38]
ChrX:149158160..155251871 [GRCh37]
ChrX:148908818..154905065 [NCBI36]
ChrX:Xq28
pathogenic
GRCh38/hg38 Xq28(chrX:150036146-156022206)x3 copy number gain See cases [RCV000050946] ChrX:150036146..156022206 [GRCh38]
ChrX:149298619..155251871 [GRCh37]
ChrX:148955035..154905065 [NCBI36]
ChrX:Xq28
pathogenic
GRCh38/hg38 Xq23-28(chrX:114533139-156022206)x1 copy number loss See cases [RCV000134947] ChrX:114533139..156022206 [GRCh38]
ChrX:113767592..155251871 [GRCh37]
ChrX:113673848..154905065 [NCBI36]
ChrX:Xq23-28
pathogenic
GRCh38/hg38 Xq28(chrX:155348480-156016920)x3 copy number gain See cases [RCV000135266] ChrX:155348480..156016920 [GRCh38]
ChrX:154577793..155246585 [GRCh37]
ChrX:154230987..154899779 [NCBI36]
ChrX:Xq28
likely benign
GRCh38/hg38 Xq21.31-28(chrX:92222680-156016920)x1 copy number loss See cases [RCV000135307] ChrX:92222680..156016920 [GRCh38]
ChrX:91477679..155246585 [GRCh37]
ChrX:91364335..154899779 [NCBI36]
ChrX:Xq21.31-28
pathogenic
GRCh38/hg38 Yq11.221-12(chrY:12965721-57212647)x0 copy number loss See cases [RCV000135325] ChrY:12965721..57212647 [GRCh38]
ChrY:15077631..59358798 [GRCh37]
ChrY:13587025..57768186 [NCBI36]
ChrY:Yq11.221-12
pathogenic
GRCh38/hg38 Yq12(chrY:56890578-57212647)x3 copy number gain See cases [RCV000134654] ChrY:56890578..57212647 [GRCh38]
ChrY:59036725..59358798 [GRCh37]
ChrY:57446113..57768186 [NCBI36]
ChrY:Yq12
benign
GRCh38/hg38 Yq11.221-12(chrY:13948013-57208726)x0 copy number loss See cases [RCV000135529] ChrY:13948013..57208726 [GRCh38]
ChrY:16059893..59354877 [GRCh37]
ChrY:14569287..57764265 [NCBI36]
ChrY:Yq11.221-12
pathogenic
GRCh38/hg38 Xq28(chrX:156006941-156020513)x4 copy number gain See cases [RCV000134526] ChrX:156006941..156020513 [GRCh38]
ChrX:155236606..155250178 [GRCh37]
ChrX:154889800..154903372 [NCBI36]
ChrX:Xq28
benign
GRCh38/hg38 Xq28(chrX:156006941-156026127)x3 copy number gain See cases [RCV000134530] ChrX:156006941..156026127 [GRCh38]
ChrX:155236606..155255792 [GRCh37]
ChrX:154889800..154908986 [NCBI36]
ChrX:Xq28
benign|likely benign|conflicting data from submitters
GRCh38/hg38 Xq28(chrX:156006941-156026127)x1 copy number loss See cases [RCV000134531] ChrX:156006941..156026127 [GRCh38]
ChrX:155236606..155255792 [GRCh37]
ChrX:Xq28
benign
GRCh38/hg38 Xq21.1-28(chrX:78605009-156016560)x1 copy number loss See cases [RCV000134570] ChrX:78605009..156016560 [GRCh38]
ChrX:77860506..155246225 [GRCh37]
ChrX:77747162..154899419 [NCBI36]
ChrX:Xq21.1-28
pathogenic
GRCh38/hg38 Xq21.1-28(chrX:85123740-156022206)x3 copy number gain See cases [RCV000133744] ChrX:85123740..156022206 [GRCh38]
ChrX:84378746..155251871 [GRCh37]
ChrX:84265402..154905065 [NCBI36]
ChrX:Xq21.1-28
pathogenic
GRCh38/hg38 Xq28(chrX:155980375-156022206)x1 copy number loss See cases [RCV000053509] ChrX:155980375..156022206 [GRCh38]
ChrX:155210040..155251871 [GRCh37]
ChrX:154863234..154905065 [NCBI36]
ChrX:Xq28
benign
GRCh38/hg38 Yq12(chrY:56903689-57208726)x0 copy number loss See cases [RCV000053517] ChrY:56903689..57208726 [GRCh38]
ChrY:59049836..59354877 [GRCh37]
ChrY:57459224..57764265 [NCBI36]
ChrY:Yq12
benign|conflicting data from submitters
GRCh38/hg38 Xq28(chrX:155717169-156022206)x3 copy number gain See cases [RCV000054349] ChrX:155717169..156022206 [GRCh38]
ChrX:154946830..155251871 [GRCh37]
ChrX:154600024..154905065 [NCBI36]
ChrX:Xq28
uncertain significance
GRCh38/hg38 Xq28(chrX:155951870-156022206)x1 copy number loss See cases [RCV000133670] ChrX:155951870..156022206 [GRCh38]
ChrX:155181535..155251871 [GRCh37]
ChrX:154834729..154905065 [NCBI36]
ChrX:Xq28
benign
GRCh38/hg38 Xq28(chrX:155998122-156022206)x0 copy number loss See cases [RCV000051224] ChrX:155998122..156022206 [GRCh38]
ChrX:155227787..155251871 [GRCh37]
ChrX:154880981..154905065 [NCBI36]
ChrX:Xq28
benign
GRCh38/hg38 Xq28(chrX:155998122-156022206)x1 copy number loss See cases [RCV000051225] ChrX:155998122..156022206 [GRCh38]
ChrX:155227787..155251871 [GRCh37]
ChrX:154880981..154905065 [NCBI36]
ChrX:Xq28
benign
GRCh38/hg38 Xq26.3-28(chrX:136956500-156020993)x1 copy number loss See cases [RCV000051732] ChrX:136956500..156020993 [GRCh38]
ChrX:136038659..155250658 [GRCh37]
ChrX:135866325..154903852 [NCBI36]
ChrX:Xq26.3-28
pathogenic
GRCh38/hg38 Xq27.3-28(chrX:145879711-156022206)x1 copy number loss Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051747]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051747]|See cases [RCV000051747] ChrX:145879711..156022206 [GRCh38]
ChrX:146715565..155251871 [GRCh37]
ChrX:144768921..154905065 [NCBI36]
ChrX:Xq27.3-28
pathogenic
GRCh38/hg38 Yq11.221-12(chrY:12586822-57208726)x0 copy number loss Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051768]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051768]|See cases [RCV000051768] ChrY:12586822..57208726 [GRCh38]
ChrY:14698756..59354877 [GRCh37]
ChrY:13208776..57764265 [NCBI36]
ChrY:Yq11.221-12
pathogenic
GRCh38/hg38 Yq11.221-12(chrY:13404515-57208726)x0 copy number loss See cases [RCV000051778] ChrY:13404515..57208726 [GRCh38]
ChrY:15516395..59354877 [GRCh37]
ChrY:14025789..57764265 [NCBI36]
ChrY:Yq11.221-12
pathogenic
GRCh37/hg19 Yp11.32-q12(chrY:20297-59358845)x2 copy number gain See cases [RCV000240246] ChrY:20297..59358845 [GRCh37]
ChrY:Yp11.32-q12
pathogenic
GRCh37/hg19 Xq11.1-28(chrX:62063537-155246643)x3 copy number gain See cases [RCV000240143] ChrX:62063537..155246643 [GRCh37]
ChrX:Xq11.1-28
pathogenic
GRCh37/hg19 Xp22.33-q28(chrX:71267-155246643)x3 copy number gain See cases [RCV000240122] ChrX:71267..155246643 [GRCh37]
ChrX:Xp22.33-q28
pathogenic
GRCh38/hg38 Xp21.1-q28(chrX:36237706-156022206)x1 copy number loss See cases [RCV000135552] ChrX:36237706..156022206 [GRCh38]
ChrX:36255823..155251871 [GRCh37]
ChrX:36165744..154905065 [NCBI36]
ChrX:Xp21.1-q28
pathogenic
GRCh38/hg38 Xp22.33-q28(chrX:10001-156030895)x1 copy number loss See cases [RCV000136005] ChrX:10001..156030895 [GRCh38]
ChrX:60001..155260560 [GRCh37]
ChrX:1..154913754 [NCBI36]
ChrX:Xp22.33-q28
pathogenic
GRCh38/hg38 Xq13.3-28(chrX:75086417-156022206)x1 copy number loss See cases [RCV000137113] ChrX:75086417..156022206 [GRCh38]
ChrX:74306252..155251871 [GRCh37]
ChrX:74222977..154905065 [NCBI36]
ChrX:Xq13.3-28
pathogenic
GRCh38/hg38 Xq28(chrX:155889104-156020513)x3 copy number gain See cases [RCV000140536] ChrX:155889104..156020513 [GRCh38]
ChrX:155118767..155250178 [GRCh37]
ChrX:154771961..154903372 [NCBI36]
ChrX:Xq28
benign
GRCh38/hg38 Xp22.33-q28(chrX:20297-156016920)x3 copy number gain See cases [RCV000141401] ChrX:20297..156016920 [GRCh38]
ChrX:70297..155246585 [GRCh37]
ChrX:10297..154899779 [NCBI36]
ChrX:Xp22.33-q28
pathogenic
GRCh38/hg38 Xq23-28(chrX:111050385-156022206)x1 copy number loss See cases [RCV000142577] ChrX:111050385..156022206 [GRCh38]
ChrX:110293613..155251871 [GRCh37]
ChrX:110180269..154905065 [NCBI36]
ChrX:Xq23-28
pathogenic
GRCh38/hg38 Xp22.33-q28(chrX:10679-156022206)x1 copy number loss See cases [RCV000148135] ChrX:10679..156022206 [GRCh38]
ChrX:60679..155251871 [GRCh37]
ChrX:679..154905065 [NCBI36]
ChrX:Xp22.33-q28
pathogenic
GRCh38/hg38 Yq11.222-12(chrY:18891467-57208726)x0 copy number loss See cases [RCV000148059] ChrY:18891467..57208726 [GRCh38]
ChrY:21053353..59354877 [GRCh37]
ChrY:19512741..57764265 [NCBI36]
ChrY:Yq11.222-12
pathogenic
GRCh38/hg38 Yq12(chrY:56903689-57208726)x0 copy number loss See cases [RCV000148064] ChrY:56903689..57208726 [GRCh38]
ChrY:59049836..59354877 [GRCh37]
ChrY:57459224..57764265 [NCBI36]
ChrY:Yq12
benign
GRCh38/hg38 Xq28(chrX:156001591-156022206)x1 copy number loss See cases [RCV000148261] ChrX:156001591..156022206 [GRCh38]
ChrX:155231256..155251871 [GRCh37]
ChrX:154884450..154905065 [NCBI36]
ChrX:Xq28
benign
GRCh38/hg38 Xp22.33-q28(chrX:10679-156022206)x3 copy number gain See cases [RCV000148141] ChrX:10679..156022206 [GRCh38]
ChrX:60679..155251871 [GRCh37]
ChrX:679..154905065 [NCBI36]
ChrX:Xp22.33-q28
pathogenic
GRCh38/hg38 Yq11.221-12(chrY:15631816-57211010)x0 copy number loss See cases [RCV000135882] ChrY:15631816..57211010 [GRCh38]
ChrY:17743696..59357161 [GRCh37]
ChrY:16253090..57766549 [NCBI36]
ChrY:Yq11.221-12
pathogenic
GRCh38/hg38 Yq12(chrY:56992525-57208726)x0 copy number loss See cases [RCV000136553] ChrY:56992525..57208726 [GRCh38]
ChrY:59138674..59354877 [GRCh37]
ChrY:57548062..57764265 [NCBI36]
ChrY:Yq12
benign
GRCh38/hg38 Xp22.33-q28(chrX:10679-156022206)x3 copy number gain See cases [RCV000050697] ChrX:10679..156022206 [GRCh38]
ChrX:60679..155251871 [GRCh37]
ChrX:679..154905065 [NCBI36]
ChrX:Xp22.33-q28
pathogenic|conflicting interpretations of pathogenicity|conflicting data from submitters
GRCh38/hg38 Xp22.33-q28(chrX:10679-156022206)x1 copy number loss See cases [RCV000050699] ChrX:10679..156022206 [GRCh38]
ChrX:60679..155251871 [GRCh37]
ChrX:679..154905065 [NCBI36]
ChrX:Xp22.33-q28
pathogenic|conflicting interpretations of pathogenicity|conflicting data from submitters
GRCh38/hg38 Xq28(chrX:155699559-156022206)x1 copy number loss See cases [RCV000136868] ChrX:155699559..156022206 [GRCh38]
ChrX:154929220..155251871 [GRCh37]
ChrX:154582414..154905065 [NCBI36]
ChrX:Xq28
pathogenic
GRCh38/hg38 Xq27.2-28(chrX:141650284-156022206)x1 copy number loss See cases [RCV000136912] ChrX:141650284..156022206 [GRCh38]
ChrX:140738414..155251871 [GRCh37]
ChrX:140566080..154905065 [NCBI36]
ChrX:Xq27.2-28
pathogenic
GRCh38/hg38 Xq28(chrX:155434676-156022206)x3 copy number gain See cases [RCV000137037] ChrX:155434676..156022206 [GRCh38]
ChrX:154664337..155251871 [GRCh37]
ChrX:154317531..154905065 [NCBI36]
ChrX:Xq28
likely benign|uncertain significance
GRCh38/hg38 Yq11.23-12(chrY:26389936-57208726)x0 copy number loss See cases [RCV000137091] ChrY:26389936..57208726 [GRCh38]
ChrY:28536083..59354877 [GRCh37]
ChrY:26945471..57764265 [NCBI36]
ChrY:Yq11.23-12
benign
GRCh38/hg38 Xq13.3-28(chrX:76604011-156022206)x1 copy number loss See cases [RCV000137138] ChrX:76604011..156022206 [GRCh38]
ChrX:75824420..155251871 [GRCh37]
ChrX:75740824..154905065 [NCBI36]
ChrX:Xq13.3-28
pathogenic
GRCh38/hg38 Xq25-28(chrX:123793526-156022206)x1 copy number loss See cases [RCV000137167] ChrX:123793526..156022206 [GRCh38]
ChrX:122927376..155251871 [GRCh37]
ChrX:122755057..154905065 [NCBI36]
ChrX:Xq25-28
pathogenic|uncertain significance
GRCh38/hg38 Xp22.33-q28(chrX:40704-156022362)x3 copy number gain See cases [RCV000052325] ChrX:40704..156022362 [GRCh38]
ChrX:90704..155252027 [GRCh37]
ChrX:30704..154905221 [NCBI36]
ChrX:Xp22.33-q28
pathogenic
GRCh38/hg38 Xp22.33-q28(chrX:237659-156022362)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052327]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052327]|See cases [RCV000052327] ChrX:237659..156022362 [GRCh38]
ChrX:154326..155252027 [GRCh37]
ChrX:94326..154905221 [NCBI36]
ChrX:Xp22.33-q28
pathogenic
GRCh38/hg38 Xp22.33-q28(chrX:10679-156022826)x4 copy number gain See cases [RCV000133654] ChrX:10679..156022826 [GRCh38]
ChrX:60679..155252491 [GRCh37]
ChrX:679..154905685 [NCBI36]
ChrX:Xp22.33-q28
pathogenic
GRCh38/hg38 Xq13.2-28(chrX:74510116-156022206)x1 copy number loss See cases [RCV000134958] ChrX:74510116..156022206 [GRCh38]
ChrX:73729951..155251871 [GRCh37]
ChrX:73646676..154905065 [NCBI36]
ChrX:Xq13.2-28
pathogenic
GRCh38/hg38 Xp21.1-q28(chrX:37076284-156016920)x1 copy number loss See cases [RCV000135300] ChrX:37076284..156016920 [GRCh38]
ChrX:37094357..155246585 [GRCh37]
ChrX:37004278..154899779 [NCBI36]
ChrX:Xp21.1-q28
pathogenic
GRCh38/hg38 Xp22.33-q28(chrX:20297-156026127)x1 copy number loss See cases [RCV000135321] ChrX:20297..156026127 [GRCh38]
ChrX:70297..155255792 [GRCh37]
ChrX:10297..154908986 [NCBI36]
ChrX:Xp22.33-q28
pathogenic
GRCh37/hg19 Xp22.33-q28(chrX:176426-155250222)x3 copy number gain See cases [RCV000239843] ChrX:176426..155250222 [GRCh37]
ChrX:Xp22.33-q28
pathogenic
GRCh37/hg19 Yp11.32-q12(chrY:10701-59349277)x1 copy number loss See cases [RCV000240213] ChrY:10701..59349277 [GRCh37]
ChrY:Yp11.32-q12
pathogenic
GRCh37/hg19 Xp22.2-q28(chrX:13147668-155250222)x3 copy number gain See cases [RCV000239798] ChrX:13147668..155250222 [GRCh37]
ChrX:Xp22.2-q28
pathogenic
GRCh37/hg19 Xp22.33-q28(chrX:71267-155255839)x1 copy number loss See cases [RCV000239832] ChrX:71267..155255839 [GRCh37]
ChrX:Xp22.33-q28
pathogenic
GRCh37/hg19 Yp11.32-q12(chrY:100002-59353228)x2 copy number gain See cases [RCV000239812] ChrY:100002..59353228 [GRCh37]
ChrY:Yp11.32-q12
pathogenic
GRCh37/hg19 Yp11.32-q12(chrY:21267-59349649)x2 copy number gain See cases [RCV000239787] ChrY:21267..59349649 [GRCh37]
ChrY:Yp11.32-q12
pathogenic
GRCh37/hg19 Yq12(chrY:59036725-59349591)x0 copy number loss See cases [RCV000449032] ChrY:59036725..59349591 [GRCh37]
ChrY:Yq12
benign
GRCh37/hg19 Xp22.33-q28(chrX:60701-155246271)x3 copy number gain See cases [RCV000239989] ChrX:60701..155246271 [GRCh37]
ChrX:Xp22.33-q28
pathogenic
GRCh37/hg19 Yq11.221-12(chrY:16188682-59349649)x0 copy number loss See cases [RCV000240102] ChrY:16188682..59349649 [GRCh37]
ChrY:Yq11.221-12
pathogenic
GRCh37/hg19 Xp22.33-q28(chrX:70297-155255839)x3 copy number gain See cases [RCV000239934] ChrX:70297..155255839 [GRCh37]
ChrX:Xp22.33-q28
pathogenic
GRCh37/hg19 Xq27.3-28(chrX:142174780-155250222)x2 copy number gain See cases [RCV000240530] ChrX:142174780..155250222 [GRCh37]
ChrX:Xq27.3-28
pathogenic
GRCh37/hg19 Xq11.1-28(chrX:62063537-155250222)x3 copy number gain See cases [RCV000240148] ChrX:62063537..155250222 [GRCh37]
ChrX:Xq11.1-28
pathogenic
GRCh37/hg19 Xp22.33-q28(chrX:2707626-155250222)x2 copy number gain See cases [RCV000240541] ChrX:2707626..155250222 [GRCh37]
ChrX:Xp22.33-q28
pathogenic
GRCh37/hg19 Yp11.32-q12(chrY:126426-59349649)x2 copy number gain See cases [RCV000240301] ChrY:126426..59349649 [GRCh37]
ChrY:Yp11.32-q12
pathogenic
GRCh37/hg19 Yp11.32-q12(chrY:126426-59353228)x2 copy number gain See cases [RCV000240305] ChrY:126426..59353228 [GRCh37]
ChrY:Yp11.32-q12
pathogenic
GRCh37/hg19 Xp22.33-q28(chrX:70297-155255792) copy number loss See cases [RCV000449461] ChrX:70297..155255792 [GRCh37]
ChrX:Xp22.33-q28
pathogenic
GRCh37/hg19 Xq21.33-28(chrX:94043221-155246585)x1 copy number loss See cases [RCV000449365] ChrX:94043221..155246585 [GRCh37]
ChrX:Xq21.33-28
pathogenic
GRCh37/hg19 Xp22.33-q28(chrX:71267-155255792)x1 copy number loss See cases [RCV000446197] ChrX:71267..155255792 [GRCh37]
ChrX:Xp22.33-q28
pathogenic
GRCh37/hg19 Yq11.221-12(chrY:15415024-59349591)x0 copy number loss See cases [RCV000446382] ChrY:15415024..59349591 [GRCh37]
ChrY:Yq11.221-12
pathogenic
GRCh37/hg19 Xq28(chrX:155236606-155246585)x3 copy number gain See cases [RCV000446253] ChrX:155236606..155246585 [GRCh37]
ChrX:Xq28
benign
GRCh37/hg19 Yq11.223-12(chrY:24108372-59358798)x0 copy number loss See cases [RCV000447015] ChrY:24108372..59358798 [GRCh37]
ChrY:Yq11.223-12
pathogenic
GRCh37/hg19 Xp22.33-q28(chrX:60701-155246225)x3 copy number gain See cases [RCV000446270] ChrX:60701..155246225 [GRCh37]
ChrX:Xp22.33-q28
pathogenic
GRCh37/hg19 Yq12(chrY:58983344-59358798)x0 copy number loss See cases [RCV000446023] ChrY:58983344..59358798 [GRCh37]
ChrY:Yq12
benign
GRCh37/hg19 Xp22.33-q28(chrX:70297-155255792)x4 copy number gain See cases [RCV000448034] ChrX:70297..155255792 [GRCh37]
ChrX:Xp22.33-q28
pathogenic
GRCh37/hg19 Xp22.33-q28(chrX:70297-155246585)x1 copy number loss See cases [RCV000448652] ChrX:70297..155246585 [GRCh37]
ChrX:Xp22.33-q28
pathogenic
GRCh37/hg19 Yp11.32-q12(chrY:20297-59356174) copy number loss See cases [RCV000448395] ChrY:20297..59356174 [GRCh37]
ChrY:Yp11.32-q12
pathogenic
GRCh37/hg19 Xq28(chrX:154933719-155246585)x0 copy number loss See cases [RCV000447939] ChrX:154933719..155246585 [GRCh37]
ChrX:Xq28
benign
GRCh37/hg19 Yq12(chrY:59028692-59349591)x0 copy number loss See cases [RCV000448976] ChrY:59028692..59349591 [GRCh37]
ChrY:Yq12
benign
GRCh37/hg19 Yq12(chrY:59033287-59363566)x0 copy number loss See cases [RCV000510941] ChrY:59033287..59363566 [GRCh37]
ChrY:Yq12
benign
GRCh37/hg19 Xq28(chrX:154617179-155254881)x2 copy number gain not provided [RCV000753952] ChrX:154617179..155254881 [GRCh37]
ChrX:Xq28
benign
GRCh37/hg19 Xq27.1-28(chrX:138750575-155246749)x1 copy number loss not provided [RCV000753810] ChrX:138750575..155246749 [GRCh37]
ChrX:Xq27.1-28
pathogenic
GRCh37/hg19 Xq27.1-28(chrX:139504958-155254881)x1 copy number loss not provided [RCV000753815] ChrX:139504958..155254881 [GRCh37]
ChrX:Xq27.1-28
pathogenic
GRCh37/hg19 Xp22.33-q28(chrX:60814-155254881)x2 copy number gain not provided [RCV000753277] ChrX:60814..155254881 [GRCh37]
ChrX:Xp22.33-q28
pathogenic
GRCh37/hg19 Xq13.2-28(chrX:73472626-155254881)x1 copy number loss not provided [RCV000753606] ChrX:73472626..155254881 [GRCh37]
ChrX:Xq13.2-28
pathogenic
GRCh37/hg19 Xp22.33-q28(chrX:60262-155245765)x1 copy number loss not provided [RCV000753271] ChrX:60262..155245765 [GRCh37]
ChrX:Xp22.33-q28
pathogenic
GRCh37/hg19 Xp22.33-q28(chrX:60262-155245765)x3 copy number gain not provided [RCV000753272] ChrX:60262..155245765 [GRCh37]
ChrX:Xp22.33-q28
pathogenic
Single allele duplication Autistic disorder of childhood onset [RCV000754378] ChrY:1..57227415 [GRCh38]
ChrY:Yp11.32-q12
likely pathogenic
Single allele duplication Autistic disorder of childhood onset [RCV000754365] ChrX:1..156040895 [GRCh38]
ChrX:Xp22.33-q28
pathogenic
GRCh37/hg19 Xq11.1-28(chrX:61694576-155254881)x1 copy number loss not provided [RCV000753556] ChrX:61694576..155254881 [GRCh37]
ChrX:Xq11.1-28
pathogenic

Additional Information

Database Acc Id Source(s)
COSMIC WASIR1 COSMIC
Ensembl Genes ENSG00000185203 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000399966 ENTREZGENE
GTEx ENSG00000185203 GTEx
HGNC ID HGNC:38513 ENTREZGENE
Human Proteome Map WASIR1 Human Proteome Map
NCBI Gene 100128260 ENTREZGENE
RNAcentral URS0000A76759 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-08-21 WASIR1  WASH and IL9R antisense RNA 1  WASIR1  WASH and IL9R antisense RNA 1 (non-protein coding)  Symbol and/or name change 5135510 APPROVED
2011-07-27 WASIR1  WASH and IL9R antisense RNA 1 (non-protein coding)  NCRNA00286B  non-protein coding RNA 286B  Symbol and/or name change 5135510 APPROVED