LOC120094818 (TIMELESS-interacting protein-like) - Rat Genome Database

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Gene: LOC120094818 (TIMELESS-interacting protein-like) Rattus norvegicus
Analyze
Symbol: LOC120094818 (Ensembl: Tipin)
Name: TIMELESS-interacting protein-like (Ensembl:timeless interacting protein)
RGD ID: 41385375
Description: Predicted to be involved in DNA damage response and replication fork processing.
Type: protein-coding
RefSeq Status: MODEL
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr89121,139,813 - 121,141,734 (-)NCBIGRCr8
mRatBN7.29113,693,252 - 113,694,434 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl864,780,828 - 64,801,352 (+)EnsemblmRatBN7.2 Ensembl
Cytogenetic Map9q38NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function
DNA binding  (IBA)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.

Genomics


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)925268044114175309Rat


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_039084951 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_039084951   ⟹   XP_038940879
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr89121,139,813 - 121,141,734 (-)NCBI
mRatBN7.29113,693,252 - 113,694,434 (-)NCBI
Protein Sequences
Protein RefSeqs XP_038940879 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000053083.2
  ENSRNOP00000059833
RefSeq Acc Id: XP_038940879   ⟸   XM_039084951
- UniProtKB: F1LM96 (UniProtKB/TrEMBL)
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-26291 BioCyc
Ensembl Genes ENSRNOG00000037221 UniProtKB/TrEMBL
  ENSRNOG00000043068 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000056239.3 UniProtKB/TrEMBL
  ENSRNOT00000066973 UniProtKB/TrEMBL
InterPro Csm3 UniProtKB/TrEMBL
  TIPIN/Csm3/Swi3 UniProtKB/TrEMBL
NCBI Gene LOC120094818 ENTREZGENE
PANTHER TIMELESS INTERACTING-RELATED UniProtKB/TrEMBL
  TIMELESS-INTERACTING PROTEIN UniProtKB/TrEMBL
Pfam Swi3 UniProtKB/TrEMBL
PhenoGen LOC120094818 PhenoGen
RatGTEx ENSRNOG00000037221 RatGTEx
  ENSRNOG00000043068 RatGTEx
UniProt F1LM96 ENTREZGENE, UniProtKB/TrEMBL
  F1M2N9_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-01-27 LOC120094818  TIMELESS-interacting protein-like      Symbol and Name status set to provisional 70820 PROVISIONAL