LOC120100384 (small nucleolar RNA SNORA32) - Rat Genome Database

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Gene: LOC120100384 (small nucleolar RNA SNORA32) Rattus norvegicus
Analyze
No known orthologs.
Symbol: LOC120100384
Name: small nucleolar RNA SNORA32
RGD ID: 41374688
Description:
Type: snorna
RefSeq Status: MODEL
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr813,213,421 - 3,213,542 (+)NCBIGRCr8
mRatBN7.211,401,588 - 1,401,709 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl11,401,588 - 1,401,709 (+)EnsemblmRatBN7.2 Ensembl
Cytogenetic Map1p13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in LOC120100384
3 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354647Despr8Despair related QTL 80.0000341locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1124744506Rat
2298546Neuinf4Neuroinflammation QTL 45.1nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)1128736750Rat
2313053Bss51Bone structure and strength QTL 513.80.0001tibia length (VT:0004357)tibia length (CMO:0000450)1132356093Rat
2313070Bss52Bone structure and strength QTL 524.40.0001body length (VT:0001256)body length (CMO:0000013)1132356093Rat
2313090Bmd69Bone mineral density QTL 694.40.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)1132356093Rat
738020Pia8Pristane induced arthritis QTL 84.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1165833076Rat
1578650Bmd6Bone mineral density QTL 612.2femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)150910843284926Rat
1578651Bmd7Bone mineral density QTL 714.2femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)150910843284926Rat
1578669Bss9Bone structure and strength QTL 96.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)150910843284926Rat
1554320Bmd1Bone mineral density QTL 112.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)150910886060548Rat


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_005500147 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000107712
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl11,401,588 - 1,401,709 (+)Ensembl
RefSeq Acc Id: XR_005500147
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr813,213,421 - 3,213,542 (+)NCBI
mRatBN7.211,401,588 - 1,401,709 (+)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-62479 BioCyc
Ensembl Genes ENSRNOG00000070200 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000107712 ENTREZGENE
NCBI Gene LOC120100384 ENTREZGENE
PhenoGen LOC120100384 PhenoGen
RatGTEx ENSRNOG00000070200 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-01-27 LOC120100384  small nucleolar RNA SNORA32      Symbol and Name status set to provisional 70820 PROVISIONAL