Rnu6-259 (RNA, U6 small nuclear 259) - Rat Genome Database

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Gene: Rnu6-259 (RNA, U6 small nuclear 259) Rattus norvegicus
Analyze
Symbol: Rnu6-259
Name: RNA, U6 small nuclear 259
RGD ID: 41323823
Description:
Type: snrna
RefSeq Status: MODEL
Previously known as: LOC120101184; U6 spliceosomal RNA
RGD Orthologs
Human
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr829,508,246 - 9,508,349 (+)NCBIGRCr8
mRatBN7.227,772,452 - 7,772,555 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl27,772,452 - 7,772,555 (+)EnsemblmRatBN7.2 Ensembl
Cytogenetic Map2q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Rnu6-259
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr829,508,246 - 9,508,349 (+)NCBIGRCr8
mRatBN7.227,772,452 - 7,772,555 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl27,772,452 - 7,772,555 (+)EnsemblmRatBN7.2 Ensembl
Cytogenetic Map2q11NCBI
RNU6-678P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383133,664,926 - 133,665,034 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3133,664,926 - 133,665,034 (+)EnsemblGRCh38hg38GRCh38
GRCh373133,383,770 - 133,383,878 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map3q22.1NCBI
CHM1_13133,347,155 - 133,347,263 (+)NCBICHM1_1
T2T-CHM13v2.03136,410,091 - 136,410,199 (+)NCBIT2T-CHM13v2.0


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631682Bp115Blood pressure QTL 1154.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2137410502Rat
738010Lnnr3Liver neoplastic nodule remodeling QTL 32.94liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)2141244106Rat
61355Bp36Blood pressure QTL 362.9blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)25873687102844969Rat


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_005501581 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000109920
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl27,772,452 - 7,772,555 (+)Ensembl
RefSeq Acc Id: XR_005501581
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr829,508,246 - 9,508,349 (+)NCBI
mRatBN7.227,772,452 - 7,772,555 (+)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-55064 BioCyc
Ensembl Genes ENSRNOG00000068300 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000109920 ENTREZGENE
NCBI Gene LOC120101184 ENTREZGENE
PhenoGen Rnu6-259 PhenoGen
RatGTEx ENSRNOG00000068300 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-07-05 Rnu6-259  RNA, U6 small nuclear 259  LOC120101184  U6 spliceosomal RNA  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2021-01-27 LOC120101184  U6 spliceosomal RNA      Symbol and Name status set to provisional 70820 PROVISIONAL