LOC120097272 (small nucleolar RNA SNORA40) - Rat Genome Database

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Gene: LOC120097272 (small nucleolar RNA SNORA40) Rattus norvegicus
Analyze
Symbol: LOC120097272
Name: small nucleolar RNA SNORA40
RGD ID: 41286265
Description:
Type: snorna
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81513,128,564 - 13,128,694 (-)NCBIGRCr8
mRatBN7.21510,698,025 - 10,698,155 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1510,698,025 - 10,698,155 (-)EnsemblmRatBN7.2 Ensembl
Cytogenetic Map15p16NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
LOC120097272
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81513,128,564 - 13,128,694 (-)NCBIGRCr8
mRatBN7.21510,698,025 - 10,698,155 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1510,698,025 - 10,698,155 (-)EnsemblmRatBN7.2 Ensembl
Cytogenetic Map15p16NCBI
SNORA40C
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386110,848,546 - 110,848,673 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6110,848,546 - 110,848,673 (+)EnsemblGRCh38hg38GRCh38
GRCh376111,169,749 - 111,169,876 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map6q21NCBI
T2T-CHM13v2.06112,027,148 - 112,027,275 (+)NCBIT2T-CHM13v2.0
Gm22382
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39968,187,856 - 68,187,985 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl968,187,856 - 68,187,985 (+)EnsemblGRCm39 Ensembl
GRCm38968,280,574 - 68,280,703 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl968,280,574 - 68,280,703 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map9CNCBI

Variants

.
Variants in LOC120097272
1 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354657Despr13Despair related QTL 130.0022locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)15129912054Rat
8552920Pigfal8Plasma insulin-like growth factor 1 level QTL 83blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)15134723002Rat
8694361Abfw6Abdominal fat weight QTL 610.20.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)15134723002Rat
9589149Insul29Insulin level QTL 299.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)15134723002Rat
731170Pur3Proteinuria QTL 32.30.0005urine protein amount (VT:0005160)urine protein excretion rate (CMO:0000759)15141686771Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15142356671Rat
2298549Neuinf12Neuroinflammation QTL 123.5nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)15155302115Rat
10401805Kidm51Kidney mass QTL 51kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1530632945306329Rat
5684946Bss98Bone structure and strength QTL 983.90.0026tibia strength trait (VT:1000284)tibia ultimate force (CMO:0001734)15105825014481294Rat
1641913Colcr2Colorectal carcinoma resistance QTL 26.570.0197intestine integrity trait (VT:0010554)colorectal tumor number (CMO:0001794)15226636822711984Rat
1641913Colcr2Colorectal carcinoma resistance QTL 26.570.0197intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)15226636822711984Rat
738017Hcas7Hepatocarcinoma susceptibility QTL 72.91liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)15226636846921453Rat
1582251Gluco24Glucose level QTL 243.20.0008blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)15553075650530756Rat
631273Lecl2Lens clarity QTL 20.001lens clarity trait (VT:0001304)age of onset/diagnosis of cataract (CMO:0001584)151059608955596089Rat


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_005494491 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000105652
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1510,698,025 - 10,698,155 (-)Ensembl
RefSeq Acc Id: XR_005494491
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81513,128,564 - 13,128,694 (-)NCBI
mRatBN7.21510,698,025 - 10,698,155 (-)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-14391 BioCyc
Ensembl Genes ENSRNOG00000068304 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000105652 ENTREZGENE
NCBI Gene LOC120097272 ENTREZGENE
PhenoGen LOC120097272 PhenoGen
RatGTEx ENSRNOG00000068304 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-01-27 LOC120097272  small nucleolar RNA SNORA40      Symbol and Name status set to provisional 70820 PROVISIONAL