LOC120098771 (40S ribosomal protein S20-like) - Rat Genome Database

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Gene: LOC120098771 (40S ribosomal protein S20-like) Rattus norvegicus
Analyze
Symbol: LOC120098771
Name: 40S ribosomal protein S20-like
RGD ID: 41204827
Description:
Type: protein-coding
RefSeq Status: MODEL
Previously known as: small ribosomal subunit protein uS10-like
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr814,085,494 - 4,086,752 (-)NCBIGRCr8
mRatBN7.212,265,115 - 2,266,775 (-)NCBImRatBN7.2mRatBN7.2
Cytogenetic Map1p13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in LOC120098771
5 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354647Despr8Despair related QTL 80.0000341locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1124744506Rat
2298546Neuinf4Neuroinflammation QTL 45.1nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)1128736750Rat
2313053Bss51Bone structure and strength QTL 513.80.0001tibia length (VT:0004357)tibia length (CMO:0000450)1132356093Rat
2313070Bss52Bone structure and strength QTL 524.40.0001body length (VT:0001256)body length (CMO:0000013)1132356093Rat
2313090Bmd69Bone mineral density QTL 694.40.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)1132356093Rat
738020Pia8Pristane induced arthritis QTL 84.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1165833076Rat
1578650Bmd6Bone mineral density QTL 612.2femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)150910843284926Rat
1578651Bmd7Bone mineral density QTL 714.2femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)150910843284926Rat
1578669Bss9Bone structure and strength QTL 96.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)150910843284926Rat
1554320Bmd1Bone mineral density QTL 112.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)150910886060548Rat
1600360Mcs16Mammary carcinoma susceptibility QTL 162.4mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1224439043433040Rat


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_039098461 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_039098461   ⟹   XP_038954389
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr814,085,494 - 4,086,752 (-)NCBI
mRatBN7.212,265,115 - 2,266,775 (-)NCBI
Protein Sequences
Protein RefSeqs XP_038954389 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_038954389   ⟸   XM_039098461


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-62446 BioCyc
NCBI Gene LOC120098771 ENTREZGENE
PhenoGen LOC120098771 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-01-27 LOC120098771  40S ribosomal protein S20-like      Symbol and Name status set to provisional 70820 PROVISIONAL