LOC120096971 (developmental pluripotency-associated protein 3-like) - Rat Genome Database

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Gene: LOC120096971 (developmental pluripotency-associated protein 3-like) Rattus norvegicus
Analyze
No known orthologs.
Symbol: LOC120096971
Name: developmental pluripotency-associated protein 3-like
RGD ID: 41202618
Description: Orthologous to human DPPA3 (developmental pluripotency associated 3).
Type: protein-coding
RefSeq Status: MODEL
Previously known as: AABR07017902.2
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81531,188,599 - 31,201,939 (-)NCBIGRCr8
mRatBN7.21527,224,329 - 27,232,700 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1527,225,434 - 27,225,910 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl1532,412,245 - 32,412,709 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map15p13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IBA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.

Genomics

Variants

.
Variants in LOC120096971
28 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354657Despr13Despair related QTL 130.0022locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)15129912054Rat
8552920Pigfal8Plasma insulin-like growth factor 1 level QTL 83blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)15134723002Rat
8694361Abfw6Abdominal fat weight QTL 610.20.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)15134723002Rat
9589149Insul29Insulin level QTL 299.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)15134723002Rat
731170Pur3Proteinuria QTL 32.30.0005urine protein amount (VT:0005160)urine protein excretion rate (CMO:0000759)15141686771Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15142356671Rat
2298549Neuinf12Neuroinflammation QTL 123.5nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)15155302115Rat
10401805Kidm51Kidney mass QTL 51kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1530632945306329Rat
738017Hcas7Hepatocarcinoma susceptibility QTL 72.91liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)15226636846921453Rat
1582251Gluco24Glucose level QTL 243.20.0008blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)15553075650530756Rat
631273Lecl2Lens clarity QTL 20.001lens clarity trait (VT:0001304)age of onset/diagnosis of cataract (CMO:0001584)151059608955596089Rat
2300167Bmd63Bone mineral density QTL 635.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
2300173Bmd62Bone mineral density QTL 6212.80.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
2293688Bss29Bone structure and strength QTL 295.310.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)151111114256111142Rat
2317750Glom26Glomerulus QTL 264.3urine protein amount (VT:0005160)urine protein level (CMO:0000591)151249614165205939Rat
5685002Bss103Bone structure and strength QTL 1032.8tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)151448116528469888Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151672552880672115Rat
1331729Rf42Renal function QTL 423.071kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)151736289773690657Rat
631550Bw7Body weight QTL 73.6body mass (VT:0001259)body weight (CMO:0000012)151985656634924750Rat
2324620Coatc3Coat color QTL 3coat/hair pigmentation trait (VT:0010463)pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)151985656646187442Rat
10054130Srcrt8Stress Responsive Cort QTL 82.180.0085blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)152211793367117933Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)152280624098288169Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)152280624098288169Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)152280624098288169Rat


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_039093830 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000066351   ⟹   ENSRNOP00000062153
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1527,225,434 - 27,225,910 (-)Ensembl
RefSeq Acc Id: XM_039093830   ⟹   XP_038949758
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81531,188,599 - 31,201,939 (-)NCBI
mRatBN7.21527,224,329 - 27,232,700 (-)NCBI
Protein Sequences
Protein RefSeqs XP_038949758 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000062153
  ENSRNOP00000062153.3
RefSeq Acc Id: XP_038949758   ⟸   XM_039093830
- UniProtKB: D3Z932 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000062153   ⟸   ENSRNOT00000066351

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3Z932-F1-model_v2 AlphaFold D3Z932 1-155 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:41202618 AgrOrtholog
BioCyc Gene G2FUF-13834 BioCyc
Ensembl Genes ENSRNOG00000042103 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000066351.3 UniProtKB/TrEMBL
InterPro Dppa3 UniProtKB/TrEMBL
NCBI Gene LOC120096971 ENTREZGENE
PANTHER DEVELOPMENTAL PLURIPOTENCY-ASSOCIATED PROTEIN 3 UniProtKB/TrEMBL
  PTHR31577 UniProtKB/TrEMBL
Pfam PGC7_Stella UniProtKB/TrEMBL
PhenoGen LOC120096971 PhenoGen
RatGTEx ENSRNOG00000042103 RatGTEx
UniProt D3Z932 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 LOC120096971  developmental pluripotency-associated protein 3-like  AABR07017902.2    Data merged from RGD:15004566 737654 PROVISIONAL
2021-01-27 LOC120096971  developmental pluripotency-associated protein 3-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2019-11-08 AABR07017902.2        Symbol and Name status set to provisional 45752 PROVISIONAL