LOC120101175 (5.8S ribosomal RNA) - Rat Genome Database

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Gene: LOC120101175 (5.8S ribosomal RNA) Rattus norvegicus
Analyze
Symbol: LOC120101175
Name: 5.8S ribosomal RNA
RGD ID: 41184133
Description:
Type: rrna
RefSeq Status: MODEL
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr824,760,844 - 4,760,996 (-)NCBIGRCr8
mRatBN7.223,046,721 - 3,046,873 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl23,046,721 - 3,046,873 (-)EnsemblmRatBN7.2 Ensembl
Cytogenetic Map2q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in LOC120101175
3 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631682Bp115Blood pressure QTL 1154.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2137410502Rat
738010Lnnr3Liver neoplastic nodule remodeling QTL 32.94liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)2141244106Rat


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_005501572 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000116667
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl23,046,721 - 3,046,873 (-)Ensembl
RefSeq Acc Id: XR_005501572
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr824,760,844 - 4,760,996 (-)NCBI
mRatBN7.223,046,721 - 3,046,873 (-)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-55132 BioCyc
Ensembl Genes ENSRNOG00000070998 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000116667 ENTREZGENE
NCBI Gene LOC120101175 ENTREZGENE
PhenoGen LOC120101175 PhenoGen
RatGTEx ENSRNOG00000070998 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-01-27 LOC120101175  5.8S ribosomal RNA      Symbol and Name status set to provisional 70820 PROVISIONAL