Asdurf (ASNSD1 upstream open reading frame) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Asdurf (ASNSD1 upstream open reading frame) Rattus norvegicus
Analyze
Symbol: Asdurf
Name: ASNSD1 upstream open reading frame
RGD ID: 41174017
Description: Predicted to be part of RPAP3/R2TP/prefoldin-like complex.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: ASNSD1 upstream open reading frame protein; ASNSD1 upstream reading frame
RGD Orthologs
Human
Mouse
Bonobo
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8955,618,799 - 55,628,125 (+)NCBIGRCr8
mRatBN7.2948,126,808 - 48,136,134 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl948,126,808 - 48,139,073 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx956,653,226 - 56,662,562 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0961,776,050 - 61,785,386 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0960,072,028 - 60,081,364 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Cytogenetic Map9q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

Genomics

Comparative Map Data
Asdurf
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8955,618,799 - 55,628,125 (+)NCBIGRCr8
mRatBN7.2948,126,808 - 48,136,134 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl948,126,808 - 48,139,073 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx956,653,226 - 56,662,562 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0961,776,050 - 61,785,386 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0960,072,028 - 60,081,364 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Cytogenetic Map9q22NCBI
ASDURF
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382189,661,459 - 189,666,401 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2189,661,452 - 189,666,437 (+)EnsemblGRCh38hg38GRCh38
GRCh372190,526,185 - 190,531,127 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map2q32.2NCBI
T2T-CHM13v2.02190,150,718 - 190,155,647 (+)NCBIT2T-CHM13v2.0
Asdurf
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39153,387,488 - 53,391,911 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl153,387,638 - 53,391,778 (-)EnsemblGRCm39 Ensembl
GRCm38153,348,329 - 53,352,752 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl153,348,479 - 53,352,619 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map1C1.1NCBI
ASDURF
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21392,353,836 - 92,358,794 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B92,368,822 - 92,373,780 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B76,967,735 - 76,972,694 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B194,887,530 - 194,892,484 (+)NCBIpanpan1.1PanPan1.1panPan2
ASDURF
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Vero_WHO_p1.0NW_023666040124,293,737 - 124,298,758 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in Asdurf
31 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
7411571Bw138Body weight QTL 13814.30.001body mass (VT:0001259)body weight gain (CMO:0000420)93253550577535505Rat
1300180Bw14Body weight QTL 143.776body mass (VT:0001259)body weight (CMO:0000012)92375402461381613Rat
11353957Bmd92Bone mineral density QTL 920.01tibia mineral mass (VT:1000283)volumetric bone mineral density (CMO:0001553)94611419991114199Rat
631680Cm11Cardiac mass QTL 113.10.00089heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)92043051965430519Rat
70218Cm28Cardiac mass QTL 288.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)92526804479271759Rat
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)925268044114175309Rat
7207805Bmd88Bone mineral density QTL 884femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)92375402458157242Rat
631643Bp120Blood pressure QTL 12030.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)92207120067071200Rat
12879506Pur33Proteinuria QTL 33urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)94464992189649921Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)925661188100929786Rat
10058949Gmadr5Adrenal mass QTL 520.014adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)94279151387976209Rat
9589133Insul26Insulin level QTL 2617.960.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)9895256053952560Rat
631211Bw4Body weight QTL45.31retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)9510982650109826Rat
7411609Foco16Food consumption QTL 1625.60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)9895256053952560Rat
8662828Vetf6Vascular elastic tissue fragility QTL 63.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)93696235992058970Rat
61352Bp34Blood pressure QTL 345arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94249534379271511Rat
6903937Bp356Blood pressure QTL 3560.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94790220852283252Rat
1598834Memor11Memory QTL 112.5exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)93696235977814038Rat
70186Niddm26Non-insulin dependent diabetes mellitus QTL 263.87blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)92207116986369743Rat
7207814Bmd91Bone mineral density QTL 913.5femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)92375414483851531Rat
6903941Pur31Proteinuria QTL 310.036urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)94019418885194188Rat
2290450Scl57Serum cholesterol level QTL 574.15blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)93696235995410867Rat
11353949Bp393Blood pressure QTL 393arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94019418885194188Rat
11353951Bp394Blood pressure QTL 394arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94464992189649921Rat
10054125Srcrt7Stress Responsive Cort QTL 73.330.0011blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)9187073594Rat
11353947Bp392Blood pressure QTL 392arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)9728325252283252Rat
1331757Cdexp1CD45RC expression in CD8 T cells QTL 14.3CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)9102453767509080Rat
7411656Foco26Food consumption QTL 269.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)93253550577535505Rat
1598823Memor16Memory QTL 161.9exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)92213332249968732Rat
1641894Alcrsp12Alcohol response QTL 12response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)92746863972468639Rat


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001399676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000059233   ⟹   ENSRNOP00000056002
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl948,126,808 - 48,139,073 (+)Ensembl
RefSeq Acc Id: NM_001399676   ⟹   NP_001386605
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8955,618,799 - 55,628,125 (+)NCBI
mRatBN7.2948,126,808 - 48,136,134 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001386605 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Acc Id: ENSRNOP00000056002   ⟸   ENSRNOT00000059233
RefSeq Acc Id: NP_001386605   ⟸   NM_001399676

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-27632 BioCyc
Ensembl Genes ENSRNOG00000003942 Ensembl
NCBI Gene Asdurf ENTREZGENE
PhenoGen Asdurf PhenoGen
RatGTEx ENSRNOG00000003942 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-18 Asdurf  ASNSD1 upstream open reading frame  Asdurf  ASNSD1 upstream reading frame  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2021-01-27 Asdurf  ASNSD1 upstream reading frame      Symbol and Name status set to provisional 70820 PROVISIONAL