Slc2a4rg (SLC2A4 regulator) - Rat Genome Database

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Gene: Slc2a4rg (SLC2A4 regulator) Rattus norvegicus
Analyze
Symbol: Slc2a4rg
Name: SLC2A4 regulator
RGD ID: 41152591
Description: Predicted to enable DNA-binding transcription factor activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nuclear speck; INTERACTS WITH 3-isobutyl-1-methyl-7H-xanthine (ortholog); all-trans-retinoic acid (ortholog); antirheumatic drug (ortholog).
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83188,871,509 - 188,874,652 (+)NCBIGRCr8
mRatBN7.23168,493,975 - 168,497,616 (+)NCBImRatBN7.2mRatBN7.2
Cytogenetic Map3q43NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
Slc2a4rg
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83188,871,509 - 188,874,652 (+)NCBIGRCr8
mRatBN7.23168,493,975 - 168,497,616 (+)NCBImRatBN7.2mRatBN7.2
Cytogenetic Map3q43NCBI
SLC2A4RG
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382063,739,776 - 63,744,050 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2063,739,776 - 63,744,050 (+)EnsemblGRCh38hg38GRCh38
GRCh372062,371,129 - 62,375,403 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362061,841,655 - 61,845,847 (+)NCBINCBI36Build 36hg18NCBI36
Build 342061,841,654 - 61,845,846NCBI
Celera2059,055,481 - 59,059,673 (+)NCBICelera
Cytogenetic Map20q13.33NCBI
HuRef2059,104,105 - 59,107,784 (+)NCBIHuRef
CHM1_12062,273,081 - 62,277,182 (+)NCBICHM1_1
T2T-CHM13v2.02065,560,042 - 65,564,316 (+)NCBIT2T-CHM13v2.0
Slc2a4rg
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955528486,140 - 488,920 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955528485,653 - 488,923 (-)NCBIChiLan1.0ChiLan1.0
SLC2A4RG
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22169,546,111 - 69,549,811 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12069,538,118 - 69,541,818 (+)NCBINHGRI_mPanPan1
PanPan1.12061,664,191 - 61,667,699 (+)NCBIpanpan1.1PanPan1.1panPan2
SLC2A4RG
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12447,274,026 - 47,276,844 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2447,273,844 - 47,276,918 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2446,406,993 - 46,410,666 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02448,411,950 - 48,415,615 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12447,256,844 - 47,260,510 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02447,381,700 - 47,385,355 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02448,119,805 - 48,123,473 (+)NCBIUU_Cfam_GSD_1.0
Slc2a4rg
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640195,530,531 - 195,533,934 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493651410,984,171 - 10,987,127 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493651410,984,174 - 10,987,574 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC2A4RG
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1762,657,566 - 62,659,615 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11762,655,992 - 62,659,620 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
SLC2A4RG
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12487,282 - 490,957 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2483,483 - 490,435 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605048,040,882 - 48,044,559 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc2a4rg
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474129,392,995 - 29,397,239 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474129,393,548 - 29,397,725 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Slc2a4rg
10 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)343827364169034231Rat
631541Bp81Blood pressure QTL 814arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3124122556169034231Rat
1578656Vnigr2Vascular neointimal growth QTL 24.2artery morphology trait (VT:0002191)lesioned artery residual lumen area (CMO:0001417)3130656562169034231Rat
1578653Vnigr3Vascular neointimal growth QTL 33.1artery morphology trait (VT:0002191)artery neointimal hyperplastic lesion area (CMO:0001414)3130656562169034231Rat
9589106Insul23Insulin level QTL 2313.860.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)3131635904169034231Rat
2298477Eau4Experimental allergic uveoretinitis QTL 40.0011uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)3137398739169034231Rat
8552952Pigfal13Plasma insulin-like growth factor 1 level QTL 13blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)3138799500169034231Rat
1298068Bp167Blood pressure QTL 1670.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3141074471169034231Rat
2317883Alcrsp26Alcohol response QTL 261.80.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)3145526770169034231Rat
8552791Vie2Viral induced encephalitis QTL 24.1brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)3145956084169034231Rat
1300161Rf10Renal function QTL 103.57renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)3161192952169034231Rat


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_063285226 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_063285226   ⟹   XP_063141296
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83188,871,509 - 188,874,652 (+)NCBI
Protein Sequences
Protein RefSeqs XP_063141296 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_063141296   ⟸   XM_063285226


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-46287 BioCyc
NCBI Gene Slc2a4rg ENTREZGENE
PhenoGen Slc2a4rg PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-01-27 Slc2a4rg  SLC2A4 regulator      Symbol and Name status set to provisional 70820 PROVISIONAL