LOC120095814 (U6 spliceosomal RNA) - Rat Genome Database

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Gene: LOC120095814 (U6 spliceosomal RNA) Rattus norvegicus
Analyze
Symbol: LOC120095814
Name: U6 spliceosomal RNA
RGD ID: 41113800
Description:
Type: snrna
RefSeq Status: MODEL
Previously known as: U6
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81115,606,830 - 15,606,933 (+)NCBIGRCr8
mRatBN7.2112,160,338 - 2,160,441 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl112,160,338 - 2,160,441 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl111,470,610 - 1,470,711 (+)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map11p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
634341Bw121Body weight QTL 1213.56abdominal fat pad mass (VT:1000711)abdominal fat pad weight (CMO:0000088)11121836709Rat
1598842Glom10Glomerulus QTL 103.4kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)11135331169Rat
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)11169446234Rat
1558659Tescar1Testicular tumor resistance QTL 13.9testis integrity trait (VT:0010572)percentage of study population developing testis tumors during a period of time (CMO:0001261)11104193166113562Rat


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_005491578 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000088015
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl112,160,338 - 2,160,441 (+)Ensembl
RefSeq Acc Id: XR_005491578
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81115,606,830 - 15,606,933 (+)NCBI
mRatBN7.2112,160,338 - 2,160,441 (+)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-22324 BioCyc
Ensembl Genes ENSRNOG00000052779 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000088015 ENTREZGENE
NCBI Gene LOC120095814 ENTREZGENE
PhenoGen LOC120095814 PhenoGen
RatGTEx ENSRNOG00000052779 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 LOC120095814  U6 spliceosomal RNA  U6  U6 spliceosomal RNA  Data merged from RGD:15007412 737654 PROVISIONAL
2021-01-27 LOC120095814  U6 spliceosomal RNA      Symbol and Name status set to provisional 70820 PROVISIONAL
2019-11-08 U6  U6 spliceosomal RNA      Symbol and Name status set to provisional 45752 PROVISIONAL