LOC120094467 (small nucleolar RNA SNORA43) - Rat Genome Database

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Gene: LOC120094467 (small nucleolar RNA SNORA43) Rattus norvegicus
Analyze
Symbol: LOC120094467
Name: small nucleolar RNA SNORA43
RGD ID: 41101567
Description: INTERACTS WITH aflatoxin B1 (ortholog); bisphenol A (ortholog); doxorubicin (ortholog)
Type: snorna
RefSeq Status: MODEL
Previously known as: Gm23377; predicted gene, 23377
RGD Orthologs
Human
Mouse
Dog
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88118,979,612 - 118,979,749 (-)NCBIGRCr8
mRatBN7.28110,101,179 - 110,101,316 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8110,101,179 - 110,101,316 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl8118,196,758 - 118,196,895 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map8q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
LOC120094467
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88118,979,612 - 118,979,749 (-)NCBIGRCr8
mRatBN7.28110,101,179 - 110,101,316 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8110,101,179 - 110,101,316 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl8118,196,758 - 118,196,895 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map8q32NCBI
SNORA17B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389136,726,104 - 136,726,237 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9136,726,105 - 136,726,234 (-)EnsemblGRCh38hg38GRCh38
GRCh38.p14 Ensembl9136,726,104 - 136,726,239 (-)EnsemblGRCh38hg38GRCh38
GRCh379139,620,556 - 139,620,689 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369138,739,507 - 138,742,457 (-)NCBINCBI36Build 36hg18NCBI36
Celera9110,133,679 - 110,133,812 (-)NCBICelera
Cytogenetic Map9q34.3NCBI
HuRef9109,079,741 - 109,079,874 (-)NCBIHuRef
CHM1_19139,769,145 - 139,769,278 (-)NCBICHM1_1
T2T-CHM13v2.09148,959,288 - 148,959,421 (-)NCBIT2T-CHM13v2.0
Snora43
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39226,527,859 - 26,527,997 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl226,527,860 - 26,527,986 (-)EnsemblGRCm39 Ensembl
GRCm39 Ensembl226,527,859 - 26,527,997 (-)EnsemblGRCm39 Ensembl
GRCm38226,637,847 - 26,637,985 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl226,637,848 - 26,637,974 (-)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl226,637,847 - 26,637,985 (-)EnsemblGRCm38mm10GRCm38
MGSCv37226,493,367 - 26,493,505 (-)NCBIGRCm37MGSCv37mm9NCBIm37
Celera226,355,352 - 26,355,490 (-)NCBICelera
Cytogenetic Map2A3NCBI
cM Map218.98NCBI
LOC119865803
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha244,966,657 - 4,966,788 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0245,443,998 - 5,444,129 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1245,056,190 - 5,056,321 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0245,150,576 - 5,150,707 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0245,426,836 - 5,426,967 (+)NCBIUU_Cfam_GSD_1.0

Variants

.
Variants in LOC120094467
1 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1581557Eae16Experimental allergic encephalomyelitis QTL 163.8nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)88462195110921472Rat
631650Stl6Serum triglyceride level QTL 640.0019blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)810378157112202585Rat
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)840952565123900184Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)846531639119088626Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)846531639119088626Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)846531639119088626Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)846531639119088626Rat
2303171Bp331Blood pressure QTL 3315.570.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)861290298119084929Rat
631653Bp125Blood pressure QTL 1253.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)866142385111142385Rat
631210Bw3Body weight QTL35.9mesenteric fat pad mass (VT:0010427)mesenteric fat pad weight to body weight ratio (CMO:0000654)869349194112783834Rat
1300171Bp184Blood pressure QTL 1843.66arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)870513503118219066Rat
8694446Bw170Body weight QTL 17012.070.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)871888757116888757Rat
9590292Uminl3Urine mineral level QTL 33.620.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)871888757116888757Rat
8694200Abfw4Abdominal fat weight QTL 49.070.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)871888757116888757Rat
8694392Bw161Body weight QTL 1618.060.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)871888757116888757Rat
1549909Stresp11Stress response QTL 116.830.0019stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)873473045118473045Rat
2300181Bmd55Bone mineral density QTL 555.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)876468691121468691Rat
61437Cia6Collagen induced arthritis QTL 6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)882460758122812818Rat
2313400Anxrr25Anxiety related response QTL 25aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)889265192114019816Rat
738011Anxrr9Anxiety related response QTL 96.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)893535351123900184Rat
1358893Bp263Blood pressure QTL 2635.01arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)893965141123900184Rat
1358903Bp252Blood pressure QTL 25270.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)893965141123900184Rat
738014Anxrr15Anxiety related response QTL 153.60.005locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)895718998123900184Rat
2300182Bmd56Bone mineral density QTL 565.4femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)895718998123900184Rat
724539Cm19Cardiac mass QTL 192.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)8100149864120994388Rat


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_005488776 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000090357
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8110,101,179 - 110,101,316 (-)Ensembl
RefSeq Acc Id: XR_005488776
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88118,979,612 - 118,979,749 (-)NCBI
mRatBN7.28110,101,179 - 110,101,316 (-)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-29080 BioCyc
Ensembl Genes ENSRNOG00000059581 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000090357 ENTREZGENE
NCBI Gene LOC120094467 ENTREZGENE
PhenoGen LOC120094467 PhenoGen
RatGTEx ENSRNOG00000059581 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 LOC120094467  small nucleolar RNA SNORA43  Gm23377  predicted gene, 23377  Data merged from RGD:15012667 737654 PROVISIONAL
2021-01-27 LOC120094467  small nucleolar RNA SNORA43      Symbol and Name status set to provisional 70820 PROVISIONAL
2019-11-08 Gm23377  predicted gene, 23377      Symbol and Name status set to provisional 45752 PROVISIONAL