Gene: LOC120094467 (small nucleolar RNA SNORA43) Rattus norvegicus |
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Analyze |
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Symbol: |
LOC120094467 |
Name: |
small nucleolar RNA SNORA43 |
RGD ID: |
41101567 |
Description: |
INTERACTS WITH aflatoxin B1 (ortholog); bisphenol A (ortholog); doxorubicin (ortholog) |
Type: |
snorna
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RefSeq Status: |
MODEL |
Previously known as: |
Gm23377; predicted gene, 23377 |
RGD Orthologs |
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Alliance Genes |
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More Info |
more info ...
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More Info |
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Latest Assembly: |
mRatBN7.2 - mRatBN7.2 Assembly |
Position: |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 8 | 118,979,612 - 118,979,749 (-) | NCBI | | GRCr8 | | | mRatBN7.2 | 8 | 110,101,179 - 110,101,316 (-) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 8 | 110,101,179 - 110,101,316 (-) | Ensembl | | mRatBN7.2 Ensembl | | | Rnor_6.0 Ensembl | 8 | 118,196,758 - 118,196,895 (-) | NCBI | Rnor6.0 | | rn6 | Rnor6.0 | Cytogenetic Map | 8 | q32 | NCBI | | | | |
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JBrowse: |
View Region in Genome Browser (JBrowse)
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Model |
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References
Genomics
Comparative Map Data
LOC120094467 (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 8 | 118,979,612 - 118,979,749 (-) | NCBI | | GRCr8 | | | mRatBN7.2 | 8 | 110,101,179 - 110,101,316 (-) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 8 | 110,101,179 - 110,101,316 (-) | Ensembl | | mRatBN7.2 Ensembl | | | Rnor_6.0 Ensembl | 8 | 118,196,758 - 118,196,895 (-) | NCBI | Rnor6.0 | | rn6 | Rnor6.0 | Cytogenetic Map | 8 | q32 | NCBI | | | | |
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SNORA17B (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 9 | 136,726,104 - 136,726,237 (-) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 9 | 136,726,105 - 136,726,234 (-) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh38.p14 Ensembl | 9 | 136,726,104 - 136,726,239 (-) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 9 | 139,620,556 - 139,620,689 (-) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 9 | 138,739,507 - 138,742,457 (-) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Celera | 9 | 110,133,679 - 110,133,812 (-) | NCBI | | Celera | | | Cytogenetic Map | 9 | q34.3 | NCBI | | | | | HuRef | 9 | 109,079,741 - 109,079,874 (-) | NCBI | | HuRef | | | CHM1_1 | 9 | 139,769,145 - 139,769,278 (-) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 9 | 148,959,288 - 148,959,421 (-) | NCBI | | T2T-CHM13v2.0 | | |
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Snora43 (Mus musculus - house mouse) |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | 2 | 26,527,859 - 26,527,997 (-) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 2 | 26,527,860 - 26,527,986 (-) | Ensembl | | GRCm39 Ensembl | | | GRCm39 Ensembl | 2 | 26,527,859 - 26,527,997 (-) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 2 | 26,637,847 - 26,637,985 (-) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 2 | 26,637,848 - 26,637,974 (-) | Ensembl | GRCm38 | | mm10 | GRCm38 | GRCm38.p6 Ensembl | 2 | 26,637,847 - 26,637,985 (-) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 2 | 26,493,367 - 26,493,505 (-) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | Celera | 2 | 26,355,352 - 26,355,490 (-) | NCBI | | Celera | | | Cytogenetic Map | 2 | A3 | NCBI | | | | | cM Map | 2 | 18.98 | NCBI | | | | |
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LOC119865803 (Canis lupus familiaris - dog) |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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Dog10K_Boxer_Tasha | 24 | 4,966,657 - 4,966,788 (+) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 24 | 5,443,998 - 5,444,129 (+) | NCBI | | ROS_Cfam_1.0 | | | UMICH_Zoey_3.1 | 24 | 5,056,190 - 5,056,321 (+) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 24 | 5,150,576 - 5,150,707 (+) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 24 | 5,426,836 - 5,426,967 (+) | NCBI | | UU_Cfam_GSD_1.0 | | |
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QTLs in Region (mRatBN7.2)
1581557 | Eae16 | Experimental allergic encephalomyelitis QTL 16 | 3.8 | | nervous system integrity trait (VT:0010566) | experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046) | 8 | 8462195 | 110921472 | Rat | 631650 | Stl6 | Serum triglyceride level QTL 6 | 4 | 0.0019 | blood triglyceride amount (VT:0002644) | plasma triglyceride level (CMO:0000548) | 8 | 10378157 | 112202585 | Rat | 1554321 | Bmd3 | Bone mineral density QTL 3 | 7.9 | 0.0001 | femur mineral mass (VT:0010011) | volumetric bone mineral density (CMO:0001553) | 8 | 40952565 | 123900184 | Rat | 70197 | BpQTLcluster8 | Blood pressure QTL cluster 8 | 3.482 | | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 8 | 46531639 | 119088626 | Rat | 70197 | BpQTLcluster8 | Blood pressure QTL cluster 8 | 3.482 | | arterial blood pressure trait (VT:2000000) | pulse pressure (CMO:0000292) | 8 | 46531639 | 119088626 | Rat | 70197 | BpQTLcluster8 | Blood pressure QTL cluster 8 | 3.482 | | arterial blood pressure trait (VT:2000000) | absolute change in systolic blood pressure (CMO:0000607) | 8 | 46531639 | 119088626 | Rat | 70197 | BpQTLcluster8 | Blood pressure QTL cluster 8 | 3.482 | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 8 | 46531639 | 119088626 | Rat | 2303171 | Bp331 | Blood pressure QTL 331 | 5.57 | 0.005 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 8 | 61290298 | 119084929 | Rat | 631653 | Bp125 | Blood pressure QTL 125 | 3.3 | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 8 | 66142385 | 111142385 | Rat | 631210 | Bw3 | Body weight QTL3 | 5.9 | | mesenteric fat pad mass (VT:0010427) | mesenteric fat pad weight to body weight ratio (CMO:0000654) | 8 | 69349194 | 112783834 | Rat | 1300171 | Bp184 | Blood pressure QTL 184 | 3.66 | | arterial blood pressure trait (VT:2000000) | blood pressure time series experimental set point of the baroreceptor response (CMO:0002593) | 8 | 70513503 | 118219066 | Rat | 8694446 | Bw170 | Body weight QTL 170 | 12.07 | 0.001 | retroperitoneal fat pad mass (VT:0010430) | retroperitoneal fat pad weight to body weight ratio (CMO:0000635) | 8 | 71888757 | 116888757 | Rat | 9590292 | Uminl3 | Urine mineral level QTL 3 | 3.62 | 0.001 | urine mineral amount (VT:0015086) | urine electrolyte level (CMO:0000593) | 8 | 71888757 | 116888757 | Rat | 8694200 | Abfw4 | Abdominal fat weight QTL 4 | 9.07 | 0.001 | visceral adipose mass (VT:0010063) | abdominal fat pad weight to body weight ratio (CMO:0000095) | 8 | 71888757 | 116888757 | Rat | 8694392 | Bw161 | Body weight QTL 161 | 8.06 | 0.001 | body lean mass (VT:0010483) | lean tissue morphological measurement (CMO:0002184) | 8 | 71888757 | 116888757 | Rat | 1549909 | Stresp11 | Stress response QTL 11 | 6.83 | 0.0019 | stress-related behavior trait (VT:0010451) | number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960) | 8 | 73473045 | 118473045 | Rat | 2300181 | Bmd55 | Bone mineral density QTL 55 | 5.7 | 0.0001 | femur mineral mass (VT:0010011) | volumetric bone mineral density (CMO:0001553) | 8 | 76468691 | 121468691 | Rat | 61437 | Cia6 | Collagen induced arthritis QTL 6 | | | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 8 | 82460758 | 122812818 | Rat | 2313400 | Anxrr25 | Anxiety related response QTL 25 | | | aggression-related behavior trait (VT:0015014) | tameness/aggressiveness composite score (CMO:0002136) | 8 | 89265192 | 114019816 | Rat | 738011 | Anxrr9 | Anxiety related response QTL 9 | 6.1 | | exploratory behavior trait (VT:0010471) | number of entries into a discrete space in an experimental apparatus (CMO:0000960) | 8 | 93535351 | 123900184 | Rat | 1358893 | Bp263 | Blood pressure QTL 263 | 5.01 | | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 8 | 93965141 | 123900184 | Rat | 1358903 | Bp252 | Blood pressure QTL 252 | 7 | 0.0001 | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 8 | 93965141 | 123900184 | Rat | 738014 | Anxrr15 | Anxiety related response QTL 15 | 3.6 | 0.005 | locomotor behavior trait (VT:0001392) | amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958) | 8 | 95718998 | 123900184 | Rat | 2300182 | Bmd56 | Bone mineral density QTL 56 | 5.4 | | femur mineral mass (VT:0010011) | volumetric bone mineral density (CMO:0001553) | 8 | 95718998 | 123900184 | Rat | 724539 | Cm19 | Cardiac mass QTL 19 | 2.6 | | heart mass (VT:0007028) | calculated heart weight (CMO:0000073) | 8 | 100149864 | 120994388 | Rat | |